ModCRE DB

Transcription factor

Q6RFR8 - HZF28

Zinc finger protein 28

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 221 aa

90 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)84
MotifPredictionSourceDNA bindingSupportLogoActions
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 65.9% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 61.0% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 60.6% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 60.3% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 60.3% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 60.3% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 60.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 59.1% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 59.1% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 58.6% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 58.6% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 58.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 58.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 57.1% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 57.1% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 56.9% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 56.9% identity Open · Scan
M07842_2.00 NN 70-40% CisBP CTCACCTG 56.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 56.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 56.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.2% identity Open · Scan
MA1652.1 NN 70-40% JASPAR GGAGGAGGTGAGAA 54.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.8% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 54.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 54.1% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 53.8% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 53.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.2% identity Open · Scan
M00250_2.00 NN 70-40% CisBP AATGCTAACT 53.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.0% identity Open · Scan
M07625_2.00 NN 70-40% CisBP TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 53.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 52.9% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 52.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 52.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 52.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.8% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 52.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 52.8% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.7% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 52.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.5% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.1% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 52.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.0% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 51.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 51.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.6% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 51.6% identity Open · Scan
MA1653.1 NN 70-40% JASPAR CCCCCCTCCCCC 51.5% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.4% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 51.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.2% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.2% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.2% identity Open · Scan
M00785_2.00 NN 70-40% CisBP TTCACTTCCT 51.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 51.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 50.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.8% identity Open · Scan
M08275_2.00 NN 70-40% CisBP CGCTCCCGGGCCCCC 50.7% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.7% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 50.4% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.4% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.4% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.3% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 50.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 50.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.3% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 50.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q6RFR8_Q6RFR8_HUMAN:136:187_1llm_D_1 ModCRE Homology model GGGCGCGCGCCG Region 136-187 · 1 3D model Open · Scan
TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:214_5ei9_E_1 ModCRE Homology model GGCCCCCCCCGTTATAA Region 129-214 · 1 3D model Open · Scan
TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3j_E_1 ModCRE Homology model ACCCTACAGGAGGGGGTAT Region 129-218 · 1 3D model Open · Scan
TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3m_C_1 ModCRE Homology model AAACCCTCTAAGTAAAGA Region 129-218 · 1 3D model Open · Scan
TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_2i13_A_1 ModCRE Homology model TTCCTTAGCTGAGTGGGGAA Region 129-220 · 1 3D model Open · Scan
TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_5wjq_D_1 ModCRE Homology model GGGTTCCCCCCCCCGGTT Region 129-220 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 221 aa
129-220

Region 129-220 6 PWM

Residues
92 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 129-2206 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q6RFR8_Q6RFR8_HUMAN:136:187_1llm_D_1 1llm 136-187 View model · PDB
Predicted = Low TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:214_5ei9_E_1 5ei9 129-214 View model · PDB
Predicted = Low TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3j_E_1 5v3j 129-218 View model · PDB
Predicted = Low TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3m_C_1 5v3m 129-218 View model · PDB
Predicted = Low TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_2i13_A_1 2i13 129-220 View model · PDB
Predicted = Low TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_5wjq_D_1 5wjq 129-220 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 5v3m 126:220 129 218 P:C · DNA:A,B 55.9% / 68.8% 32 View · PDB TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3m_C_1
4 5v3j 126:220 129 218 P:E · DNA:A,B 55.9% / 68.8% 32 View · PDB TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:218_5v3j_E_1
1 2i13 126:220 129 220 P:A · DNA:C,D 54.7% / 69.5% 60 View · PDB TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_2i13_A_1
5 5ei9 126:220 129 214 P:E · DNA:A,B 53.9% / 69.7% 77 View · PDB TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:214_5ei9_E_1
2 5wjq 126:220 129 220 P:D · DNA:A,B 51.6% / 72.6% 32 View · PDB TFS_tr_Q6RFR8_Q6RFR8_HUMAN:129:220_5wjq_D_1
1 1llm 126:220 136,136 187,187 P:C,D · DNA:A,B 42.3% / 53.8% 59,61 View · PDB DIMER_tr_Q6RFR8_Q6RFR8_HUMAN:136:187_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
138-160PF00096Zinc finger, C2H2 typeoverlaps 129-220
166-188PF00096Zinc finger, C2H2 typeoverlaps 129-220