ModCRE DB

Transcription factor

Q6SV71 - LHX8

LIM homeobox 8

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 73 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M05213_2.00 NN 70+% CisBP CTAACGAG 98.6% identity Open · Scan
MA0705.1 NN 70+% JASPAR CTAATTAG 97.2% identity Open · Scan
M09187_2.00 NN 70+% CisBP GCTGATTAC 78.0% identity Open · Scan
MA0658.1 NN 70+% JASPAR ACTAATTAGC 78.0% identity Open · Scan
Nearest Neighbor (70% - 40%)5
MotifPredictionSourceDNA bindingSupportLogoActions
M02182_2.00 NN 70-40% CisBP TTAATTAGC 62.0% identity Open · Scan
M06304_2.00 NN 70-40% CisBP TTAATTA 61.0% identity Open · Scan
M03796_2.00 NN 70-40% CisBP TTAATTAA 53.2% identity Open · Scan
M09137_2.00 NN 70-40% CisBP ATTAATTAATTTT 51.6% identity Open · Scan
MA0135.1 NN 70-40% JASPAR AAATTAATTAATC 51.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 73 aa
4-54

Region 4-54 0 PWM

Residues
51 aa
Domains
PF00412 · LIM domain
3D models
1 active PDB
Templates
1LQ1
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 4-541 model
Actions
Predicted = Low TFS_Q6SV71:4:54_1lq1_C_1 1lq1 4-54 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-60PF00412LIM domainoverlaps 4-54