ModCRE DB

Transcription factor

Q6V9R5 - ZNF562

Zinc finger protein 562

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 426 aa

50 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07629_2.00 Known CisBP ATTTTGCCTTGCTGGGA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.3% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 55.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.3% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.6% identity Open · Scan
M01042_2.00 NN 70-40% CisBP TGGGACCTGA 53.3% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.5% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 52.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.8% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 51.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.4% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.9% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.8% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE13
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q6V9R5_ZN562_HUMAN:370:418_1llm_D_1 ModCRE Homology model CCCGCGGCGGGG Region 370-418 · 1 3D model Open · Scan
DIMER_sp_Q6V9R5_ZN562_HUMAN:85:106_1d66_B_1 ModCRE Homology model GTTTTTAAACAA Region 85-106 · 1 3D model Open · Scan
DIMER_sp_Q6V9R5_ZN562_HUMAN:85:106_3coq_B_1 ModCRE Homology model ATTTTTTTAGGGGT Region 85-106 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:163:423_5wjq_D_1 ModCRE Homology model CCGGCGGCCCCCCTCACCCCCCCGGCCC Region 163-423 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3j_E_1 ModCRE Homology model GTTCCACCCCCCCCCTCTTCCTC Region 177-426 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3m_C_1 ModCRE Homology model CGGACCCCGCCCCCCCCGGCCCGC Region 177-426 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:181:226_4is1_D_1 ModCRE Homology model TCTCACACCG Region 181-226 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:181:226_5yj3_C_1 ModCRE Homology model CGATA Region 181-226 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:181:254_1a1g_A_1 ModCRE Homology model AGATGTGGCA Region 181-254 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:202:255_1f2i_G_1 ModCRE Homology model GCACGTTGTTA Region 202-255 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:202:255_1f2i_H_1 ModCRE Homology model AAAAAACGCGC Region 202-255 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:269:422_2i13_A_1 ModCRE Homology model AAAAGCCTAGCTCTTTCAAAA Region 269-422 · 1 3D model Open · Scan
TFS_sp_Q6V9R5_ZN562_HUMAN:314:423_5ei9_E_1 ModCRE Homology model GGCCCCCCACCCCCCCC Region 314-423 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 426 aa
85-106
163-426

Region 85-106 2 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
2 active PDBs
Templates
1D66, 3COQ
Sources
Predicted = Low
Scan this region Show models

Region 163-426 11 PWM

Residues
264 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1A1G, 1F2I, 1LLM, 2I13, 4IS1, 5EI9, 5V3J, 5V3M, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 6 summary rows
Region 85-1062 models
Actions
Predicted = Low DIMER_sp_Q6V9R5_ZN562_HUMAN:85:106_1d66_B_1 1d66 85-106 View model · PDB
Predicted = Low DIMER_sp_Q6V9R5_ZN562_HUMAN:85:106_3coq_B_1 3coq 85-106 View model · PDB
Region 163-42611 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q6V9R5_ZN562_HUMAN:370:418_1llm_D_1 1llm 370-418 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:163:423_5wjq_D_1 5wjq 163-423 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3j_E_1 5v3j 177-426 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3m_C_1 5v3m 177-426 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:181:226_4is1_D_1 4is1 181-226 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:181:226_5yj3_C_1 5yj3 181-226 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:181:254_1a1g_A_1 1a1g 181-254 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:202:255_1f2i_G_1 1f2i 202-255 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:202:255_1f2i_H_1 1f2i 202-255 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:269:422_2i13_A_1 2i13 269-422 View model · PDB
Predicted = Low TFS_sp_Q6V9R5_ZN562_HUMAN:314:423_5ei9_E_1 5ei9 314-423 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 157:426 314 423 P:E · DNA:A,B 53.6% / 67.3% 99 View · PDB TFS_sp_Q6V9R5_ZN562_HUMAN:314:423_5ei9_E_1
1 1llm 157:426 370,370 418,418 P:C,D · DNA:A,B 51.0% / 65.3% 56,57 View · PDB DIMER_sp_Q6V9R5_ZN562_HUMAN:370:418_1llm_D_1
4 2i13 157:426 269 422 P:A · DNA:C,D 50.0% / 65.6% 100 View · PDB TFS_sp_Q6V9R5_ZN562_HUMAN:269:422_2i13_A_1
2 5v3m 157:426 177 426 P:C · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3m_C_1
3 5v3j 157:426 177 426 P:E · DNA:A,B 46.4% / 63.6% 90 View · PDB TFS_sp_Q6V9R5_ZN562_HUMAN:177:426_5v3j_E_1
1 5wjq 157:426 163 423 P:D · DNA:A,B 44.4% / 62.5% 92 View · PDB TFS_sp_Q6V9R5_ZN562_HUMAN:163:423_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-81PF01352KRAB boxNo overlap with loaded model regions
204-226PF00096Zinc finger, C2H2 typeoverlaps 163-426
264-282PF00096Zinc finger, C2H2 typeoverlaps 163-426
288-310PF00096Zinc finger, C2H2 typeoverlaps 163-426
316-338PF00096Zinc finger, C2H2 typeoverlaps 163-426
344-366PF00096Zinc finger, C2H2 typeoverlaps 163-426
372-394PF00096Zinc finger, C2H2 typeoverlaps 163-426
400-422PF00096Zinc finger, C2H2 typeoverlaps 163-426