ModCRE DB

Transcription factor

Q6ZMM6

cDNA FLJ16818 fis, clone TRACH1000193, highly similar to Orphan nuclear receptor HMR

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 652 aa

34 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M05604_2.00 NN 70+% CisBP TAAAGGTCAC 99.8% identity Open · Scan
MA1112.1 NN 70+% JASPAR AAAAGGTCAC 99.8% identity Open · Scan
Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 64.1% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 59.4% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 59.4% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 59.1% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 59.1% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 59.1% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 58.5% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 58.5% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 57.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 56.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 56.9% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 56.6% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 55.3% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 55.2% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.0% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 54.9% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 54.8% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 54.8% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 54.0% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 53.7% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 53.3% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 53.3% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 53.3% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 52.7% identity Open · Scan
M03923_2.00 NN 70-40% CisBP AGAACACTGTGTACC 52.2% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 52.1% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 51.8% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 51.3% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 50.6% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.6% identity Open · Scan
MA0007.1 NN 70-40% JASPAR ATAAGAACACCCTGTACCCGCC 50.0% identity Open · Scan
MA0007.3 NN 70-40% JASPAR GGGAACACGGTGTACCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 652 aa
321-392

Region 321-392 0 PWM

Residues
72 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1R0N
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 321-3921 model
Actions
Predicted = Low DIMER_Q6ZMM6:321:392_1r0n_A_1 1r0n 321-392 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
320-388PF00105Double treble clef zinc finger, C4 typeoverlaps 321-392
456-632PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions