ModCRE DB

Transcription factor

Q6ZN29

cDNA FLJ16492 fis, clone CTONG2028758, highly similar to Mus musculus zfh-4 zinc-finger homeodomain protein 4

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 907 aa

18 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)9
MotifPredictionSourceDNA bindingSupportLogoActions
M02108_2.00 NN 70-40% CisBP CCTAATTAG 67.5% identity Open · Scan
M06304_2.00 NN 70-40% CisBP TTAATTA 56.1% identity Open · Scan
M01849_2.00 NN 70-40% CisBP ACTAATTAG 53.2% identity Open · Scan
M02182_2.00 NN 70-40% CisBP TTAATTAGC 52.6% identity Open · Scan
M02105_2.00 NN 70-40% CisBP TTAATTAG 50.8% identity Open · Scan
M05065_2.00 NN 70-40% CisBP TTAACGAG 50.8% identity Open · Scan
M09137_2.00 NN 70-40% CisBP ATTAATTAATTTT 50.8% identity Open · Scan
MA0135.1 NN 70-40% JASPAR AAATTAATTAATC 50.8% identity Open · Scan
MA0704.1 NN 70-40% JASPAR TTAATTAA 50.8% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:619:679_5hod_A_1 ModCRE Homology model AAAATTAAGGGTAATTTG Region 619-679 · 1 3D model Open · Scan
DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:621:674_6a8r_B_1 ModCRE Homology model TGATGACCCC Region 621-674 · 1 3D model Open · Scan
DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:622:677_1hdd_D_1 ModCRE Homology model GGCCCTTTATTGGCTCA Region 622-677 · 1 3D model Open · Scan
DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_2hdd_A_1 ModCRE Homology model GGCCCTTAATTGACCGG Region 624-677 · 1 3D model Open · Scan
DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_3hdd_A_1 ModCRE Homology model GGCCCTTAATTGGCTCA Region 624-677 · 1 3D model Open · Scan
TFS_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_8g8g_X_1 ModCRE Homology model TTGGGTCATTAAGAGGCT Region 269-353 · 1 3D model Open · Scan
TFS_tr_Q6ZN29_Q6ZN29_HUMAN:297:350_6a8r_B_1 ModCRE Homology model CGATGTCCGA Region 297-350 · 1 3D model Open · Scan
TFS_tr_Q6ZN29_Q6ZN29_HUMAN:622:677_3lnq_A_1 ModCRE Homology model TATATTAATTGTTC Region 622-677 · 1 3D model Open · Scan
TFS_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_3hdd_A_1 ModCRE Homology model GGGCCTTAATTGGCCAA Region 624-677 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 907 aa
269-353
618-679

Region 269-353 2 PWM

Residues
85 aa
Domains
PF00046 · Homeodomain
3D models
6 active PDBs · 5 summary rows
Templates
3L1P, 5HOD, 6A8R, 8G8G
Sources
Predicted = Low
Scan this region Show models

Region 618-679 7 PWM

Residues
62 aa
Domains
PF00046 · Homeodomain
3D models
10 active PDBs · 5 summary rows
Templates
1AU7, 1HDD, 2HDD, 3A01, 3HDD, 3LNQ, 5HOD, 6A8R
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 10 summary rows
Region 269-3536 models · 5 summary rows
Actions
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_3l1p_B_1 3l1p 269-353 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:297:353_5hod_A_1 5hod 297-353 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_3l1p_B_1 3l1p 269-353 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_8g8g_X_1 8g8g 269-353 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:297:350_6a8r_B_1 6a8r 297-350 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:297:353_5hod_A_1 5hod 297-353 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5hod 269:357 297,298 353,353 P:A,D · DNA:B,C 50.9% / 64.9% 93,96 View · PDB DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:297:353_5hod_A_1
1 5hod 269:357 297,298 353,353 P:A,D · DNA:B,C 50.9% / 64.9% 93,96 View · PDB TFS_tr_Q6ZN29_Q6ZN29_HUMAN:297:353_5hod_A_1
5 8g8g 269:357 269 353 P:X · DNA:I,J 32.9% / 52.9% 54 View · PDB TFS_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_8g8g_X_1
3 3l1p 269:357 269,269 353,353 P:A,B · DNA:M,N 32.9% / 51.8% 55,55 View · PDB DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_3l1p_B_1
4 3l1p 269:357 269,269 353,353 P:A,B · DNA:M,N 32.9% / 51.8% 55,55 View · PDB TFS_tr_Q6ZN29_Q6ZN29_HUMAN:269:353_3l1p_B_1
Region 618-67910 models · 5 summary rows
Actions
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:619:679_5hod_A_1 5hod 619-679 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:621:674_6a8r_B_1 6a8r 621-674 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:621:677_3a01_B_1 3a01 621-677 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:622:677_1hdd_D_1 1hdd 622-677 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_2hdd_A_1 2hdd 624-677 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_3hdd_A_1 3hdd 624-677 View model · PDB
Predicted = Low DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:679_1au7_B_1 1au7 624-679 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:621:677_3a01_B_1 3a01 621-677 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:622:677_3lnq_A_1 3lnq 622-677 View model · PDB
Predicted = Low TFS_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_3hdd_A_1 3hdd 624-677 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 3lnq 269:357 622 677 P:A · DNA:B,C 42.9% / 60.7% 96 View · PDB TFS_tr_Q6ZN29_Q6ZN29_HUMAN:622:677_3lnq_A_1
4 3hdd 269:357 624,622 677,677 P:A,B · DNA:C,D 42.6% / 63.0% 98,100 View · PDB DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:677_3hdd_A_1
2 3a01 269:357 618,621 677,677 P:A,B · DNA:C,D 42.1% / 61.4% 76,100 View · PDB DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:621:677_3a01_B_1
2 3a01 269:357 618,621 677,677 P:A,B · DNA:C,D 42.1% / 61.4% 76,100 View · PDB TFS_tr_Q6ZN29_Q6ZN29_HUMAN:621:677_3a01_B_1
5 1au7 269:357 624,624 679,679 P:A,B · DNA:C,D 37.5% / 55.4% 43,43 View · PDB DIMER_tr_Q6ZN29_Q6ZN29_HUMAN:624:679_1au7_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
297-353PF00046Homeodomainoverlaps 269-353
621-677PF00046Homeodomainoverlaps 618-679