Transcription factor

Q6ZNC6

cDNA FLJ16209 fis, clone CTONG2020378, moderately similar to ZINC FINGER PROTEIN 35

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 331 aa

79 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)74

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	67.8% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	67.8% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	65.4% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	64.2% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	64.2% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	64.2% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	63.0% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	63.0% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	63.0% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	63.0% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	61.9% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	60.9% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	58.2% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	58.1% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	57.8% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	56.8% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	56.2% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	56.2% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	55.5% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	55.5% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	55.4% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	55.2% identity		Open · Scan
M08887_2.00	NN 70-40%	CisBP	CCTCCTCCAGGAAGCCTTCCCTGA	54.7% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	54.6% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	53.8% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	53.8% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	53.6% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	53.6% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	53.5% identity		Open · Scan
M04475_2.00	NN 70-40%	CisBP	GATGCACGTACCGTGCCTCA	53.3% identity		Open · Scan
M06087_2.00	NN 70-40%	CisBP	ACCACCTGTTGCA	53.1% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	53.1% identity		Open · Scan
M07707_2.00	NN 70-40%	CisBP	TCCCGC	53.1% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	53.0% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	52.9% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	52.9% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	52.6% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	52.6% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	52.3% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	52.3% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	52.3% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	52.3% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	52.1% identity		Open · Scan
M07764_2.00	NN 70-40%	CisBP	CTGCACTCTCCCCTTCCCCCCCTCCCC	52.1% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	51.8% identity		Open · Scan
M07595_2.00	NN 70-40%	CisBP	GCCTGTTCCTCTCCC	51.8% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	51.8% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	51.8% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	51.6% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	51.6% identity		Open · Scan
M07729_2.00	NN 70-40%	CisBP	CCAGACTGCCTGCCAAAACCCCCT	51.5% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	51.4% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	51.4% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	51.3% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	51.1% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	51.1% identity		Open · Scan
M01457_2.00	NN 70-40%	CisBP	GCGCACGGAC	51.0% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	51.0% identity		Open · Scan
M07660_2.00	NN 70-40%	CisBP	CCGCGCCTACCTGAGGGCGCGGGCCTGGGG	51.0% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	51.0% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	50.8% identity		Open · Scan
M07593_2.00	NN 70-40%	CisBP	AGATGAAGTCACCCCTCTTAC	50.6% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	50.6% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	50.6% identity		Open · Scan
M08365_2.00	NN 70-40%	CisBP	GCCAGCAGCCATCAG	50.4% identity		Open · Scan
M07646_2.00	NN 70-40%	CisBP	CTTTTTTTT	50.3% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	50.3% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	50.2% identity		Open · Scan
M08342_2.00	NN 70-40%	CisBP	GCTCTGCCTCCCTCT	50.1% identity		Open · Scan
M00632_2.00	NN 70-40%	CisBP	ACACGCCCCT	50.0% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	50.0% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	50.0% identity		Open · Scan
M08366_2.00	NN 70-40%	CisBP	GTTTGCTGCTTACAA	50.0% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	50.0% identity		Open · Scan

ModCRE5

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:134_5egb_A_1	ModCRE	Homology model	ACGGGGCCAGGGGGGCGG	Region 25-134 · 1 3D model		Open · Scan
TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:134_5ei9_E_1	ModCRE	Homology model	ACGTGGGGGTGGGGGGC	Region 25-134 · 1 3D model		Open · Scan
TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:134_5eh2_F_1	ModCRE	Homology model	GCGTTGCCCCGGGGGCGCC	Region 27-134 · 1 3D model		Open · Scan
TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:137_6e93_A_1	ModCRE	Homology model	CATATGGCCGCTGCCTTT	Region 27-137 · 1 3D model		Open · Scan
TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:137_6e94_A_1	ModCRE	Homology model	CACAGGGCCTTGGAGTTT	Region 27-137 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 331 aa

25-299

Region 25-299 5 PWM

Residues

275 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

11 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

11 active PDB models 6 summary rows

Region 25-29911 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_Q6ZNC6_Q6ZNC6_HUMAN:191:242_1llm_D_1	1llm	191-242	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:146:299_2i13_A_1	2i13	146-299	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:162:272_5ei9_E_1	5ei9	162-272	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:134_5egb_A_1	5egb	25-134	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:134_5ei9_E_1	5ei9	25-134	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:299_5wjq_D_1	5wjq	25-299	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:134_5eh2_F_1	5eh2	27-134	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:137_6e93_A_1	6e93	27-137	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:137_6e94_A_1	6e94	27-137	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:299_5v3j_E_1	5v3j	27-299	View model · PDB
Predicted = Low	TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:299_5v3m_C_1	5v3m	27-299	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
5	5ei9	13:300	162	272	P:E · DNA:A,B	60.4% / 70.3%	100	View · PDB TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:162:272_5ei9_E_1
4	2i13	13:300	146	299	P:A · DNA:C,D	52.6% / 67.5%	100	View · PDB TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:146:299_2i13_A_1
3	5wjq	13:300	25	299	P:D · DNA:A,B	47.8% / 65.1%	97	View · PDB TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:25:299_5wjq_D_1
1	5v3m	13:300	27	299	P:C · DNA:A,B	47.5% / 65.6%	98	View · PDB TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:299_5v3m_C_1
2	5v3j	13:300	27	299	P:E · DNA:A,B	47.5% / 65.6%	98	View · PDB TFS_tr_Q6ZNC6_Q6ZNC6_HUMAN:27:299_5v3j_E_1
1	1llm	13:300	191,191	242,242	P:C,D · DNA:A,B	40.4% / 63.5%	59,61	View · PDB DIMER_tr_Q6ZNC6_Q6ZNC6_HUMAN:191:242_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
28-50	PF00096	Zinc finger, C2H2 type	overlaps 25-299
56-78	PF00096	Zinc finger, C2H2 type	overlaps 25-299
84-100	PF00096	Zinc finger, C2H2 type	overlaps 25-299
193-215	PF00096	Zinc finger, C2H2 type	overlaps 25-299
221-243	PF00096	Zinc finger, C2H2 type	overlaps 25-299
249-271	PF00096	Zinc finger, C2H2 type	overlaps 25-299
277-299	PF00096	Zinc finger, C2H2 type	overlaps 25-299