ModCRE DB

Transcription factor

Q6ZND3

cDNA FLJ16197 fis, clone CTONG1000113, highly similar to ZINC FINGER PROTEIN 184

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 667 aa

79 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)75
MotifPredictionSourceDNA bindingSupportLogoActions
M00958_2.00 NN 70-40% CisBP CGGCATCCC 69.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 67.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 66.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 65.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 64.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 63.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 61.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 59.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 59.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 58.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.8% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 57.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 57.2% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 57.2% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.7% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.5% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 56.3% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 56.0% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 55.9% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.8% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 55.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 55.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M07656_2.00 NN 70-40% CisBP TGTCTAGTAAGTCTA 54.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.5% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 54.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 53.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.6% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.0% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 52.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.2% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 52.2% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 52.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.1% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.1% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.1% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 51.8% identity Open · Scan
M01039_2.00 NN 70-40% CisBP CCCCCTA 51.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.6% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.5% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.2% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.1% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 50.8% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.7% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.6% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.3% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q6ZND3_Q6ZND3_HUMAN:259:412_2i13_A_1 ModCRE Homology model TTGGCTTCTTAGTATAATAGC Region 259-412 · 1 3D model Open · Scan
TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3j_E_1 ModCRE Homology model GGGGTCCCCCCGGGGGGAGGGGGGGA Region 277-553 · 1 3D model Open · Scan
TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3m_C_1 ModCRE Homology model GGCCAGGGCCTCCCGGGTGTGGTGCC Region 277-553 · 1 3D model Open · Scan
TFS_tr_Q6ZND3_Q6ZND3_HUMAN:303:581_5wjq_D_1 ModCRE Homology model GGGGGGCGGAACCGGCCGGTGGGGTGAA Region 303-581 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 667 aa
259-606

Region 259-606 4 PWM

Residues
348 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 259-6066 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q6ZND3_Q6ZND3_HUMAN:556:606_1llm_D_1 1llm 556-606 View model · PDB
Predicted = Low TFS_tr_Q6ZND3_Q6ZND3_HUMAN:259:412_2i13_A_1 2i13 259-412 View model · PDB
Predicted = Low TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3j_E_1 5v3j 277-553 View model · PDB
Predicted = Low TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3m_C_1 5v3m 277-553 View model · PDB
Predicted = Low TFS_tr_Q6ZND3_Q6ZND3_HUMAN:278:576_7w1m_H_1 7w1m 278-576 View model · PDB
Predicted = Low TFS_tr_Q6ZND3_Q6ZND3_HUMAN:303:581_5wjq_D_1 5wjq 303-581 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 223:664 259 412 P:A · DNA:C,D 60.4% / 70.8% 100 View · PDB TFS_tr_Q6ZND3_Q6ZND3_HUMAN:259:412_2i13_A_1
1 5wjq 223:664 303 581 P:D · DNA:A,B 55.2% / 69.2% 99 View · PDB TFS_tr_Q6ZND3_Q6ZND3_HUMAN:303:581_5wjq_D_1
2 5v3m 223:664 277 553 P:C · DNA:A,B 53.1% / 67.9% 100 View · PDB TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3m_C_1
3 5v3j 223:664 277 553 P:E · DNA:A,B 53.1% / 67.9% 100 View · PDB TFS_tr_Q6ZND3_Q6ZND3_HUMAN:277:553_5v3j_E_1
1 1llm 223:664 556,556 606,606 P:C,D · DNA:A,B 49.0% / 66.7% 58,60 View · PDB DIMER_tr_Q6ZND3_Q6ZND3_HUMAN:556:606_1llm_D_1
5 7w1m 223:664 278 576 P:H · DNA:F,G 36.0% / 51.3% 92 View · PDB TFS_tr_Q6ZND3_Q6ZND3_HUMAN:278:576_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
28-68PF01352KRAB boxNo overlap with loaded model regions
222-244PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
250-272PF00096Zinc finger, C2H2 typeoverlaps 259-606
292-317PF13465Zinc-finger double domainoverlaps 259-606
334-356PF00096Zinc finger, C2H2 typeoverlaps 259-606
362-384PF00096Zinc finger, C2H2 typeoverlaps 259-606
390-412PF00096Zinc finger, C2H2 typeoverlaps 259-606
418-440PF00096Zinc finger, C2H2 typeoverlaps 259-606
446-468PF00096Zinc finger, C2H2 typeoverlaps 259-606
474-496PF00096Zinc finger, C2H2 typeoverlaps 259-606
502-524PF00096Zinc finger, C2H2 typeoverlaps 259-606
530-552PF00096Zinc finger, C2H2 typeoverlaps 259-606
558-580PF00096Zinc finger, C2H2 typeoverlaps 259-606
586-608PF00096Zinc finger, C2H2 typeoverlaps 259-606
614-636PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
644-664PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions