ModCRE DB

Transcription factor

Q6ZNG2 - DBX2

Homeobox protein DBX2 (Developing brain homeobox protein 2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 339 aa

79 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)63
MotifPredictionSourceDNA bindingSupportLogoActions
M06489_2.00 NN 70-40% CisBP TTAATTA 66.6% identity Open · Scan
M00451_2.00 NN 70-40% CisBP ATTAATTA 63.4% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 62.2% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 60.3% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 60.3% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 58.8% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 58.4% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 57.5% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 57.3% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 57.3% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 56.8% identity Open · Scan
M09573_2.00 NN 70-40% CisBP GTTAATGA 56.6% identity Open · Scan
MA0674.1 NN 70-40% JASPAR GTAATTAA 56.6% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 56.6% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 55.7% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 55.0% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 54.9% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 54.9% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 54.9% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 54.8% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 54.7% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 54.7% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 54.7% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 54.7% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 53.8% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 53.7% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 53.7% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 53.7% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 53.5% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 53.1% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 52.9% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 52.9% identity Open · Scan
M09565_2.00 NN 70-40% CisBP GTTAATGGCC 52.9% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 52.8% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 52.8% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 52.8% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 52.8% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 52.3% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 52.3% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 52.3% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 52.3% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 52.3% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 52.3% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 51.7% identity Open · Scan
M00497_2.00 NN 70-40% CisBP TTAAGTGGT 50.9% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 50.9% identity Open · Scan
M03234_2.00 NN 70-40% CisBP TTTTAATTGGT 50.9% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 50.9% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 50.9% identity Open · Scan
M05042_2.00 NN 70-40% CisBP GTCAAGTGGT 50.9% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 50.9% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 50.9% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 50.9% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 50.9% identity Open · Scan
MA0672.1 NN 70-40% JASPAR ACCACTTGAA 50.9% identity Open · Scan
MA0897.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 50.9% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 50.9% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 50.0% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.0% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 50.0% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 50.0% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 50.0% identity Open · Scan
MA0673.1 NN 70-40% JASPAR CCACTTGAA 50.0% identity Open · Scan
ModCRE16
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:240_5zjt_A_1 ModCRE Homology model CCCATGAATCGCGG Region 189-240 · 1 3D model Open · Scan
DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:247_5zjq_A_1 ModCRE Homology model CCCATTAATTTTGC Region 189-247 · 1 3D model Open · Scan
DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:240_1jgg_B_1 ModCRE Homology model CCATTCCATT Region 190-240 · 1 3D model Open · Scan
DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:244_4qtr_A_1 ModCRE Homology model GCTAATTAAGTTA Region 190-244 · 1 3D model Open · Scan
DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:247_1b72_A_1 ModCRE Homology model GCGCTCATTAATTTGGGAC Region 190-247 · 1 3D model Open · Scan
DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:248_3a01_A_1 ModCRE Homology model CCCTCATTAATTAGTGG Region 190-248 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:189:249_2me6_A_1 ModCRE Homology model TTTTTAATTATAAT Region 189-249 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:242_7q3o_K_1 ModCRE Homology model AGACCGGTAATTGGGGG Region 190-242 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:244_4qtr_A_1 ModCRE Homology model GCAAATTTATTGC Region 190-244 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:245_2h1k_A_1 ModCRE Homology model GGGCCCCATTAACC Region 190-245 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:247_1b72_A_1 ModCRE Homology model CCCCACTAATTGGGCC Region 190-247 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:247_5lux_K_1 ModCRE Homology model CGAGCGCTAATGGGGCA Region 190-247 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_5lty_K_1 ModCRE Homology model CGAGCACTAATGGGGCCA Region 190-249 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_6es2_K_1 ModCRE Homology model CCAGGACTAATGGGGCCA Region 190-249 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_6es3_K_1 ModCRE Homology model CACAACATATGGGCCAA Region 190-249 · 1 3D model Open · Scan
TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_7q4n_K_1 ModCRE Homology model ACAGGACTAATTAGGGC Region 190-249 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 339 aa
189-249

Region 189-249 16 PWM

Residues
61 aa
Domains
PF00046 · Homeodomain
3D models
16 active PDBs · 10 summary rows
Templates
1B72, 1JGG, 2H1K, 2ME6, 3A01, 4QTR, 5LTY, 5LUX, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 10 summary rows
Region 189-24916 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:240_5zjt_A_1 5zjt 189-240 View model · PDB
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:247_5zjq_A_1 5zjq 189-247 View model · PDB
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:240_1jgg_B_1 1jgg 190-240 View model · PDB
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:244_4qtr_A_1 4qtr 190-244 View model · PDB
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:247_1b72_A_1 1b72 190-247 View model · PDB
Predicted = Low DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:248_3a01_A_1 3a01 190-248 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:189:249_2me6_A_1 2me6 189-249 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:242_7q3o_K_1 7q3o 190-242 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:244_4qtr_A_1 4qtr 190-244 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:245_2h1k_A_1 2h1k 190-245 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:247_1b72_A_1 1b72 190-247 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:247_5lux_K_1 5lux 190-247 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_5lty_K_1 5lty 190-249 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_6es2_K_1 6es2 190-249 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_6es3_K_1 6es3 190-249 View model · PDB
Predicted = Low TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_7q4n_K_1 7q4n 190-249 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 5zjt 174:249 189,210 240,244 P:A,B · DNA:C,D 55.8% / 65.4% 82,48 View · PDB DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:240_5zjt_A_1
2 7q3o 174:249 190 242 P:K · DNA:A,H 54.7% / 67.9% 86 View · PDB TFS_sp_Q6ZNG2_DBX2_HUMAN:190:242_7q3o_K_1
2 1jgg 174:249 190,190 240,240 P:A,B · DNA:C,D 52.9% / 66.7% 89,89 View · PDB DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:240_1jgg_B_1
1 5lux 174:249 190 247 P:K · DNA:A,F 51.7% / 65.5% 92 View · PDB TFS_sp_Q6ZNG2_DBX2_HUMAN:190:247_5lux_K_1
5 5zjq 174:249 189,210 247,244 P:A,B · DNA:C,D 49.2% / 64.4% 93,47 View · PDB DIMER_sp_Q6ZNG2_DBX2_HUMAN:189:247_5zjq_A_1
3 7q4n 174:249 190 249 P:K · DNA:A,D 48.3% / 65.0% 90 View · PDB TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_7q4n_K_1
4 6es2 174:249 190 249 P:K · DNA:A,D 48.3% / 65.0% 85 View · PDB TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_6es2_K_1
5 5lty 174:249 190 249 P:K · DNA:A,F 48.3% / 65.0% 84 View · PDB TFS_sp_Q6ZNG2_DBX2_HUMAN:190:249_5lty_K_1
3 3a01 174:249 190,190 248,242 P:A,B · DNA:C,D 47.5% / 61.0% 75,92 View · PDB DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:248_3a01_A_1
1 1b72 174:249 190,210 247,244 P:A,B · DNA:D,E 46.6% / 62.1% 85,47 View · PDB DIMER_sp_Q6ZNG2_DBX2_HUMAN:190:247_1b72_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
189-243PF00046Homeodomainoverlaps 189-249