ModCRE DB

Transcription factor

Q7KYZ0

p65

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 133 aa

18 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)10
MotifPredictionSourceDNA bindingSupportLogoActions
MA0258.1 NN 70-40% JASPAR CAAGGTCACGGTGACCTG 57.3% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 55.3% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 55.3% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 55.3% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 55.3% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 55.1% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 55.1% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 50.7% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 50.7% identity Open · Scan
MA0115.1 NN 70-40% JASPAR AAAGGTCAAAGGTCAAC 50.0% identity Open · Scan
ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:97_4oln_A_1 ModCRE Homology model TAAGGTCATTTTGACCTTG Region 38-97 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:99_8ifo_A_1 ModCRE Homology model CTTTGACCTTTGACCTG Region 38-99 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:111_5e6c_A_1 ModCRE Homology model ACATAGTACACTGTGT Region 39-111 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_1hcq_A_1 ModCRE Homology model CAGGTCAATGTGACCTG Region 39-97 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_4aa6_B_1 ModCRE Homology model AAGGTCACATTGACCTA Region 39-97 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:40:111_3g9i_B_1 ModCRE Homology model GGTACACTTGACCT Region 40-111 · 1 3D model Open · Scan
DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:40:111_3g9j_B_1 ModCRE Homology model TAGGTCAAATTGACCTA Region 40-111 · 1 3D model Open · Scan
TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:97_4oln_A_1 ModCRE Homology model AAAGGTCATTGTGACCTTG Region 38-97 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 133 aa
38-111

Region 38-111 8 PWM

Residues
74 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
13 active PDBs · 10 summary rows
Templates
1HCQ, 1LO1, 3G9I, 3G9J, 4AA6, 4OLN, 5E6C, 8IFO
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 10 summary rows
Region 38-11113 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:97_4oln_A_1 4oln 38-97 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:99_8ifo_A_1 8ifo 38-99 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:111_5e6c_A_1 5e6c 39-111 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_1hcq_A_1 1hcq 39-97 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_4aa6_B_1 4aa6 39-97 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:40:111_3g9i_B_1 3g9i 40-111 View model · PDB
Predicted = Low DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:40:111_3g9j_B_1 3g9j 40-111 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:94_1lo1_A_1 1lo1 38-94 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:97_4oln_A_1 4oln 38-97 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:99_8ifo_A_1 8ifo 38-99 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:111_5e6c_A_1 5e6c 39-111 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_1hcq_A_1 1hcq 39-97 View model · PDB
Predicted = Low TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_4aa6_B_1 4aa6 39-97 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1hcq 32:111 39,39 97,97 P:A,B · DNA:C,D 60.7% / 65.6% 79,83 View · PDB DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_1hcq_A_1
1 1hcq 32:111 39,39 97,97 P:A,B · DNA:C,D 60.7% / 65.6% 79,83 View · PDB TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_1hcq_A_1
2 4aa6 32:111 39,39 97,97 P:A,B · DNA:C,D 60.7% / 65.6% 83,84 View · PDB DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_4aa6_B_1
2 4aa6 32:111 39,39 97,97 P:A,B · DNA:C,D 60.7% / 65.6% 83,84 View · PDB TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:97_4aa6_B_1
4 1lo1 32:111 38 94 P:A · DNA:B,C 57.6% / 69.5% 63 View · PDB TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:94_1lo1_A_1
3 8ifo 32:111 38,38 99,99 P:A,B · DNA:C,D 55.4% / 69.2% 81,77 View · PDB DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:99_8ifo_A_1
3 8ifo 32:111 38,38 99,99 P:A,B · DNA:C,D 55.4% / 69.2% 81,77 View · PDB TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:38:99_8ifo_A_1
4 5e6c 32:111 39,39 111,104 P:A,B · DNA:C,D 48.1% / 62.3% 93,91 View · PDB DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:111_5e6c_A_1
5 5e6c 32:111 39,39 111,104 P:A,B · DNA:C,D 48.1% / 62.3% 93,91 View · PDB TFS_tr_Q7KYZ0_Q7KYZ0_HUMAN:39:111_5e6c_A_1
5 3g9i 32:111 40,40 111,111 P:A,B · DNA:C,D 47.4% / 61.8% 91,88 View · PDB DIMER_tr_Q7KYZ0_Q7KYZ0_HUMAN:40:111_3g9i_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-100PF00105Double treble clef zinc finger, C4 typeoverlaps 38-111