ModCRE DB

Transcription factor

Q7RTU4 - BHLHA9

Class A basic helix-loop-helix protein 9 (bHLHa9) (Class F basic helix-loop-helix factor 42) (bHLHf42)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 235 aa

12 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1 ModCRE Homology model GAGACAGCTGCCTC Region 59-122 · 1 3D model Open · Scan
DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1 ModCRE Homology model ACCCACGTGGG Region 59-122 · 1 3D model Open · Scan
DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1 ModCRE Homology model AGCCAGCTGGC Region 59-122 · 1 3D model Open · Scan
DIMER_sp_Q7RTU4_BHA09_HUMAN:65:123_2ql2_B_1 ModCRE Homology model GGAGCCAGCTGGCTCA Region 65-123 · 1 3D model Open · Scan
DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od4_B_1 ModCRE Homology model ACCAGCTGC Region 66-122 · 1 3D model Open · Scan
DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1 ModCRE Homology model GCCCAGCTGGCC Region 66-122 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1 ModCRE Homology model CTAGCAGCTGTCTC Region 59-122 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1 ModCRE Homology model ACCACGTGGGG Region 59-122 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1 ModCRE Homology model GCCAGCTGGCT Region 59-122 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:60:121_2ypa_A_1 ModCRE Homology model CTACTATGGCA Region 60-121 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:65:123_2ql2_B_1 ModCRE Homology model GCAGCCAGCTTGGCAT Region 65-123 · 1 3D model Open · Scan
TFS_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1 ModCRE Homology model GCCCAGCTGGCC Region 66-122 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 235 aa
59-123

Region 59-123 12 PWM

Residues
65 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
12 active PDBs · 10 summary rows
Templates
1MDY, 2QL2, 2YPA, 2YPB, 6OD4, 6OD5
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 10 summary rows
Region 59-12312 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1 1mdy 59-122 View model · PDB
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1 2ypa 59-122 View model · PDB
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1 2ypb 59-122 View model · PDB
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:65:123_2ql2_B_1 2ql2 65-123 View model · PDB
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od4_B_1 6od4 66-122 View model · PDB
Predicted = Low DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1 6od5 66-122 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1 1mdy 59-122 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1 2ypa 59-122 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1 2ypb 59-122 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:60:121_2ypa_A_1 2ypa 60-121 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:65:123_2ql2_B_1 2ql2 65-123 View model · PDB
Predicted = Low TFS_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1 6od5 66-122 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2ql2 59:129 65 123 P:B · DNA:E,F 45.8% / 62.7% 100 View · PDB TFS_sp_Q7RTU4_BHA09_HUMAN:65:123_2ql2_B_1
4 6od5 59:129 66,66 122,122 P:A,B · DNA:X,Y 41.4% / 56.9% 91,95 View · PDB DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1
5 6od4 59:129 66,66 122,122 P:A,B · DNA:W,X 41.4% / 56.9% 93,93 View · PDB DIMER_sp_Q7RTU4_BHA09_HUMAN:66:122_6od4_B_1
5 6od5 59:129 66,66 122,122 P:A,B · DNA:X,Y 41.4% / 56.9% 91,95 View · PDB TFS_sp_Q7RTU4_BHA09_HUMAN:66:122_6od5_B_1
3 1mdy 59:129 59,66 122,122 P:A,B · DNA:E,F 40.6% / 56.2% 92,90 View · PDB DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1
4 1mdy 59:129 59,66 122,122 P:A,B · DNA:E,F 40.6% / 56.2% 92,90 View · PDB TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_1mdy_A_1
1 2ypb 59:129 60,59 121,122 P:A,B · DNA:E,F 38.5% / 55.4% 92,86 View · PDB DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1
2 2ypa 59:129 60,59 121,122 P:A,B · DNA:E,F 38.5% / 55.4% 92,87 View · PDB DIMER_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1
2 2ypb 59:129 60,59 121,122 P:A,B · DNA:E,F 38.5% / 55.4% 92,86 View · PDB TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypb_B_1
3 2ypa 59:129 60,59 121,122 P:A,B · DNA:E,F 38.5% / 55.4% 92,87 View · PDB TFS_sp_Q7RTU4_BHA09_HUMAN:59:122_2ypa_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
66-117PF00010Helix-loop-helix DNA-binding domainoverlaps 59-123