ModCRE DB

Transcription factor

Q7Z516

Nuclear receptor corepressor 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 2343 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q7Z516_Q7Z516_HUMAN:509:560_3osg_A_1 ModCRE Homology model AAACGAAAGATT Region 509-560 · 1 3D model Open · Scan
TFS_tr_Q7Z516_Q7Z516_HUMAN:514:563_1msf_C_1 ModCRE Homology model CTTAACTGGTG Region 514-563 · 1 3D model Open · Scan
TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_L_1 ModCRE Homology model CGAATTTTCTAAAAAC Region 517-572 · 1 3D model Open · Scan
TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_N_1 ModCRE Homology model TTTTTAAAAAATTTT Region 517-572 · 1 3D model Open · Scan
TFS_tr_Q7Z516_Q7Z516_HUMAN:518:560_3osf_A_1 ModCRE Homology model AAAAGATTTTATT Region 518-560 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 2343 aa
509-572

Region 509-572 5 PWM

Residues
64 aa
Domains
PF00249 · Myb-like DNA-binding domain
3D models
5 active PDBs · 5 summary rows
Templates
1MSF, 3OSF, 3OSG, 6VYP
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 509-5725 models · 5 summary rows
Actions
Predicted = Low TFS_tr_Q7Z516_Q7Z516_HUMAN:509:560_3osg_A_1 3osg 509-560 View model · PDB
Predicted = Low TFS_tr_Q7Z516_Q7Z516_HUMAN:514:563_1msf_C_1 1msf 514-563 View model · PDB
Predicted = Low TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_L_1 6vyp 517-572 View model · PDB
Predicted = Low TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_N_1 6vyp 517-572 View model · PDB
Predicted = Low TFS_tr_Q7Z516_Q7Z516_HUMAN:518:560_3osf_A_1 3osf 518-560 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6vyp 509:572 517 572 P:N · DNA:I,J 44.6% / 73.2% 42 View · PDB TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_N_1
2 6vyp 509:572 517 572 P:L · DNA:I,J 44.6% / 73.2% 42 View · PDB TFS_tr_Q7Z516_Q7Z516_HUMAN:517:572_6vyp_L_1
4 3osf 509:572 518 560 P:A · DNA:B,C 32.6% / 60.5% 41 View · PDB TFS_tr_Q7Z516_Q7Z516_HUMAN:518:560_3osf_A_1
5 1msf 509:572 514 563 P:C · DNA:A,B 32.0% / 54.0% 47 View · PDB TFS_tr_Q7Z516_Q7Z516_HUMAN:514:563_1msf_C_1
3 3osg 509:572 509 560 P:A · DNA:B,C 26.9% / 57.7% 46 View · PDB TFS_tr_Q7Z516_Q7Z516_HUMAN:509:560_3osg_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
41-129PF15784G-protein pathway suppressor 2-interacting domainNo overlap with loaded model regions
518-561PF00249Myb-like DNA-binding domainoverlaps 509-572
1819-1848PF27579Nuclear receptor corepressor 1 N-terminal domainNo overlap with loaded model regions