ModCRE DB

Transcription factor

Q7Z5D8 - NANOGNB

NANOG neighbor homeobox (Homeobox protein C14)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 188 aa

6 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q7Z5D8_NANGN_HUMAN:120:165_4uus_A_1 ModCRE Homology model GCACATAAATTTA Region 120-165 · 1 3D model Open · Scan
TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_1ahd_P_1 ModCRE Homology model GTAAATTTTTTTTA Region 120-160 · 1 3D model Open · Scan
TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xic_A_1 ModCRE Homology model GGAAAAAATTTGGG Region 120-160 · 1 3D model Open · Scan
TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xid_A_1 ModCRE Homology model GTGACAAATTGTTG Region 120-160 · 1 3D model Open · Scan
TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlw_A_1 ModCRE Homology model AATTTT Region 120-160 · 1 3D model Open · Scan
TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlx_A_1 ModCRE Homology model CTTTTT Region 120-160 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 188 aa
120-165

Region 120-165 6 PWM

Residues
46 aa
Domains
PF00046 · Homeodomain
3D models
6 active PDBs · 5 summary rows
Templates
1AHD, 4UUS, 4XIC, 4XID, 5JLW, 5JLX
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 5 summary rows
Region 120-1656 models · 5 summary rows
Actions
Predicted = Low DIMER_sp_Q7Z5D8_NANGN_HUMAN:120:165_4uus_A_1 4uus 120-165 View model · PDB
Predicted = Low TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_1ahd_P_1 1ahd 120-160 View model · PDB
Predicted = Low TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xic_A_1 4xic 120-160 View model · PDB
Predicted = Low TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xid_A_1 4xid 120-160 View model · PDB
Predicted = Low TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlw_A_1 5jlw 120-160 View model · PDB
Predicted = Low TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlx_A_1 5jlx 120-160 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1ahd 120:160 120 160 P:P · DNA:A,B 31.7% / 51.2% 60 View · PDB TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_1ahd_P_1
2 4xic 120:160 120 160 P:A · DNA:B,C 31.7% / 51.2% 69 View · PDB TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xic_A_1
3 4xid 120:160 120 160 P:A · DNA:B,C 31.7% / 51.2% 70 View · PDB TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_4xid_A_1
4 5jlx 120:160 120 160 P:A · DNA:B,C 31.7% / 51.2% 71 View · PDB TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlx_A_1
5 5jlw 120:160 120 160 P:A · DNA:B,C 31.7% / 51.2% 71 View · PDB TFS_sp_Q7Z5D8_NANGN_HUMAN:120:160_5jlw_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
109-157PF00046Homeodomainoverlaps 120-165