Region 13-117 3 PWM
- Residues
- 105 aa
- Domains
- PF00352 · Transcription factor TFIID (or TATA-binding protein, TBP)
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 5IY7, 5IYA, 6O9L
- Sources
- Predicted = Low
Transcription factor
Q7Z6U1 - TBPL1
TATA-box binding protein like 1
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 128 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iy7_P_1 | ModCRE | Homology model | TTTATCCCG | Region 13-117 · 1 3D model | Open · Scan | |
| TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iya_P_1 | ModCRE | Homology model | TTTTGCCCC | Region 13-117 · 1 3D model | Open · Scan | |
| TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_6o9l_P_1 | ModCRE | Homology model | ACACTTTAAACCC | Region 13-117 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
128 aa
13-117
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
3 active PDB models
3 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 13-1173 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iy7_P_1 | 5iy7 | 13-117 | View model · PDB |
| Predicted = Low | TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iya_P_1 | 5iya | 13-117 | View model · PDB |
| Predicted = Low | TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_6o9l_P_1 | 6o9l | 13-117 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6o9l | 13:117 | 13 | 117 | P:P · DNA:X,Y | 45.3% / 66.0% | 56 | View · PDB TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_6o9l_P_1 |
| 2 | 5iya | 13:117 | 13 | 117 | P:P · DNA:X,Y | 45.3% / 66.0% | 56 | View · PDB TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iya_P_1 |
| 3 | 5iy7 | 13:117 | 13 | 117 | P:P · DNA:X,Y | 45.3% / 66.0% | 56 | View · PDB TFS_tr_Q7Z6U1_Q7Z6U1_HUMAN:13:117_5iy7_P_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 11-91 | PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) | overlaps 13-117 |