ModCRE DB

Transcription factor

Q7Z6U2 - TBPL1

TATA box-binding protein-like 1 (TATA box-binding protein-related factor 2) (TBP-like factor) (TBP-related protein)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 163 aa

5 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7edx_P_1 ModCRE Homology model CGTTATTTTAAAAGCCAA Region 13-161 · 1 3D model Open · Scan
TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egd_P_1 ModCRE Homology model GGGGCCAGTCCCCC Region 13-161 · 1 3D model Open · Scan
TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egj_P_1 ModCRE Homology model GGGGCCCGCCCCCCCC Region 13-161 · 1 3D model Open · Scan
TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iue_U_1 ModCRE Homology model AGTAATTTAAAAGCCCAT Region 13-161 · 1 3D model Open · Scan
TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iuh_U_1 ModCRE Homology model TTTTTAAAAGCCAAT Region 13-161 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 163 aa
13-161

Region 13-161 5 PWM

Residues
149 aa
Domains
PF00352 · Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 · Transcription factor TFIID (or TATA-binding protein, TBP)
3D models
5 active PDBs · 5 summary rows
Templates
7EDX, 7EGD, 7EGJ, 8IUE, 8IUH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 5 summary rows
Region 13-1615 models · 5 summary rows
Actions
Predicted = Low TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7edx_P_1 7edx 13-161 View model · PDB
Predicted = Low TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egd_P_1 7egd 13-161 View model · PDB
Predicted = Low TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egj_P_1 7egj 13-161 View model · PDB
Predicted = Low TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iue_U_1 8iue 13-161 View model · PDB
Predicted = Low TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iuh_U_1 8iuh 13-161 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 7egj 13:161 13 161 P:P · DNA:X,Y 42.7% / 62.7% 84 View · PDB TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egj_P_1
2 7egd 13:161 13 161 P:P · DNA:X,Y 42.7% / 62.7% 84 View · PDB TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7egd_P_1
3 7edx 13:161 13 161 P:P · DNA:X,Y 42.7% / 62.7% 84 View · PDB TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_7edx_P_1
4 8iuh 13:161 13 161 P:U · DNA:X,Y 42.7% / 62.7% 84 View · PDB TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iuh_U_1
5 8iue 13:161 13 161 P:U · DNA:X,Y 42.7% / 62.7% 84 View · PDB TFS_tr_Q7Z6U2_Q7Z6U2_HUMAN:13:161_8iue_U_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
11-91PF00352Transcription factor TFIID (or TATA-binding protein, TBP)overlaps 13-161
99-161PF00352Transcription factor TFIID (or TATA-binding protein, TBP)overlaps 13-161