ModCRE DB

Transcription factor

Q86TF7 - HOXC4

Homeobox C4

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 264 aa

127 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)8
MotifPredictionSourceDNA bindingSupportLogoActions
MA1504.1 NN 70+% JASPAR GTCATTAA 99.6% identity Open · Scan
MA1496.1 NN 70+% JASPAR GTCATTAG 88.0% identity Open · Scan
M06227_2.00 NN 70+% CisBP TTAATTAT 83.3% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 77.0% identity Open · Scan
M02166_2.00 NN 70+% CisBP CTAATTAC 73.6% identity Open · Scan
M03799_2.00 NN 70+% CisBP GTAATTAC 73.5% identity Open · Scan
MA0903.1 NN 70+% JASPAR ACTAATTAGC 73.3% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 72.2% identity Open · Scan
Nearest Neighbor (70% - 40%)119
MotifPredictionSourceDNA bindingSupportLogoActions
MA1500.1 NN 70-40% JASPAR TTAATTAC 69.8% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 69.4% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 68.4% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 68.4% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 67.3% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 67.3% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 67.2% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 67.2% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 67.2% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 67.2% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 67.0% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 67.0% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 66.6% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 66.6% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 66.6% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 66.0% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 65.8% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 65.4% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 64.9% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 64.9% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 64.9% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 64.9% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 64.9% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 64.9% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 64.9% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 63.9% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 63.9% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 63.9% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 63.7% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 63.3% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 63.1% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 63.1% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 62.5% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 62.2% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 61.7% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 61.6% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 61.6% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 61.6% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 61.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 61.6% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 61.6% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 61.6% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 61.6% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 61.0% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 61.0% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 61.0% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 60.8% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 60.8% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 60.2% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 60.0% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 60.0% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 59.6% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 58.9% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 58.9% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 58.1% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 58.0% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 57.8% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 57.6% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 57.6% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 57.4% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 57.4% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 57.4% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 56.5% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 56.2% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 56.2% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 56.2% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 56.2% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 56.2% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 56.1% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 56.1% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 56.1% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 56.0% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 55.8% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 55.8% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 55.5% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 55.5% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 55.2% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 55.1% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 54.5% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 54.3% identity Open · Scan
M10805_2.00 NN 70-40% CisBP GGACAAATAGCCC 54.3% identity Open · Scan
MA0122.1 NN 70-40% JASPAR TTAAGTGGA 54.3% identity Open · Scan
MA0122.2 NN 70-40% JASPAR ACCACTTAA 54.3% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 54.2% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 54.2% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 54.2% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 54.0% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 52.6% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 52.6% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 52.6% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 52.5% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 52.4% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 52.4% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 52.3% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 51.9% identity Open · Scan
MA0724.1 NN 70-40% JASPAR ACCGATTAG 51.7% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 51.5% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 51.3% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 50.8% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 50.8% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 50.8% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 50.8% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 50.8% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 50.8% identity Open · Scan
MA0124.2 NN 70-40% JASPAR ACCACTTAA 50.8% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 50.8% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 50.8% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 50.8% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 50.8% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 50.8% identity Open · Scan
M00465_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 50.0% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 50.0% identity Open · Scan
M06554_2.00 NN 70-40% CisBP TTAATTG 50.0% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 50.0% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 50.0% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 50.0% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 50.0% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 264 aa
133-216

Region 133-216 0 PWM

Residues
84 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
2R5Y
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 133-2161 model
Actions
Predicted = Low DIMER_Q86TF7:133:216_2r5y_A_1 2r5y 133-216 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
157-213PF00046Homeodomainoverlaps 133-216