ModCRE DB

Transcription factor

Q86UC5 - RARB

Retinoic acid receptor beta (Nuclear receptor subfamily 1 group B member 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 346 aa

30 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 99.7% identity Open · Scan
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 99.6% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 98.5% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 98.5% identity Open · Scan
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 86.0% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 86.0% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 86.0% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 86.0% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 81.5% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 80.7% identity Open · Scan
Nearest Neighbor (70% - 40%)20
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 64.0% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 61.7% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 60.3% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 58.4% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 58.4% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 58.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 58.0% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 57.5% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.6% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 56.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 56.6% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 55.7% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.1% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 54.7% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 54.1% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 52.8% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 52.8% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 52.8% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.9% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 346 aa
1-305

Region 1-305 0 PWM

Residues
305 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type PF00104 · Ligand-binding domain of nuclear hormone receptor
3D models
1 active PDB
Templates
4IQR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-3051 model
Actions
Predicted = Low DIMER_Q86UC5:1:305_4iqr_B_1 4iqr 1-305 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-46PF00105Double treble clef zinc finger, C4 typeoverlaps 1-305
118-290PF00104Ligand-binding domain of nuclear hormone receptoroverlaps 1-305