Transcription factor

Q86UD4 - ZNF329

Zinc finger protein 329

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 541 aa

138 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M08359_2.00	Known	CisBP	CTGGATCAAGCCGTACCTGAA	Direct PWM		Open · Scan
M08933_2.00	Known	CisBP	CTGGATCCAGCCATGCCTGA	Direct PWM		Open · Scan
ZN329_HUMAN.H11MO.0.C	Known	HOCOMOCO	CTGGATCCAGCCATGCCTGA	Direct PWM		Open · Scan

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)124

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	69.7% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	67.4% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	67.0% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	65.8% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	65.8% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	65.6% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	65.1% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	64.7% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	64.7% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	63.5% identity		Open · Scan
M08985_2.00	NN 70-40%	CisBP	TGAGGACCTACTGTGTGCC	62.6% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	62.3% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	61.7% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	61.4% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	61.1% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	60.8% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	59.8% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	59.6% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	59.5% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	59.3% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	59.1% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	59.0% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	59.0% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	58.5% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	58.3% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	58.3% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	58.2% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	58.0% identity		Open · Scan
M07593_2.00	NN 70-40%	CisBP	AGATGAAGTCACCCCTCTTAC	58.0% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	58.0% identity		Open · Scan
M07646_2.00	NN 70-40%	CisBP	CTTTTTTTT	57.8% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	57.6% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	57.6% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	57.5% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	57.4% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	57.2% identity		Open · Scan
M04611_2.00	NN 70-40%	CisBP	CTTTCGGACAC	56.8% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	56.8% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	56.8% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	56.8% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	56.8% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	56.3% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	56.3% identity		Open · Scan
M08274_2.00	NN 70-40%	CisBP	TTACTTGCAGCCCAACGCATTCCTAAC	56.3% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	56.3% identity		Open · Scan
M00609_2.00	NN 70-40%	CisBP	GGAAGCCCTA	55.9% identity		Open · Scan
M07566_2.00	NN 70-40%	CisBP	TCAAACCATCCTTGC	55.8% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	55.8% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	55.7% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	55.7% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	55.7% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	55.6% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	55.3% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	55.2% identity		Open · Scan
MA1656.1	NN 70-40%	JASPAR	CCAAGCCCAACCAG	54.7% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	54.6% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	54.5% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	54.5% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	54.2% identity		Open · Scan
M08901_2.00	NN 70-40%	CisBP	CCAGTTCACACC	54.2% identity		Open · Scan
M08311_2.00	NN 70-40%	CisBP	CTGGAACAGAAGGGGCGA	53.9% identity		Open · Scan
MA1154.1	NN 70-40%	JASPAR	CTTTCCCACAACACGAC	53.9% identity		Open · Scan
M07582_2.00	NN 70-40%	CisBP	TCCCTG	53.8% identity		Open · Scan
M07691_2.00	NN 70-40%	CisBP	CCTGCAGCCACCTTGGCCTTG	53.8% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	53.8% identity		Open · Scan
M07567_2.00	NN 70-40%	CisBP	CCACTCCACTCA	53.5% identity		Open · Scan
M07707_2.00	NN 70-40%	CisBP	TCCCGC	53.5% identity		Open · Scan
M07686_2.00	NN 70-40%	CisBP	TAGCTTGTTTCCAGCCAC	53.4% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	53.4% identity		Open · Scan
M07683_2.00	NN 70-40%	CisBP	GTGGGAAAGCCT	53.3% identity		Open · Scan
MA1601.1	NN 70-40%	JASPAR	ATGTGGGAAA	53.3% identity		Open · Scan
M08292_2.00	NN 70-40%	CisBP	TGTATTCCTTGTCATGTGTGG	53.2% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	53.1% identity		Open · Scan
M07746_2.00	NN 70-40%	CisBP	CAGCTGGCGCCCAACATGGGTCCC	53.1% identity		Open · Scan
M00142_2.00	NN 70-40%	CisBP	GTGCTCCT	53.0% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	53.0% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	53.0% identity		Open · Scan
M07645_2.00	NN 70-40%	CisBP	CTCCTT	52.8% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	52.7% identity		Open · Scan
M07706_2.00	NN 70-40%	CisBP	GTCTTTGAGAGGGCCCAGATGTTGGACTTA	52.7% identity		Open · Scan
M07590_2.00	NN 70-40%	CisBP	TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT	52.6% identity		Open · Scan
M08283_2.00	NN 70-40%	CisBP	GACTTTTATTTT	52.6% identity		Open · Scan
M00765_2.00	NN 70-40%	CisBP	CCCGCCCCC	52.5% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	52.5% identity		Open · Scan
M05859_2.00	NN 70-40%	CisBP	GGCCACGCCCACT	52.5% identity		Open · Scan
MA0079.1	NN 70-40%	JASPAR	GGGGCGGGGT	52.5% identity		Open · Scan
MA0685.1	NN 70-40%	JASPAR	TAAGCCACGCCCCCTTT	52.5% identity		Open · Scan
MA0747.1	NN 70-40%	JASPAR	GCCACGCCCACT	52.5% identity		Open · Scan
M07601_2.00	NN 70-40%	CisBP	CAGATGCCGGCACCATGCTTC	52.3% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	52.2% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	51.9% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	51.8% identity		Open · Scan
M08366_2.00	NN 70-40%	CisBP	GTTTGCTGCTTACAA	51.7% identity		Open · Scan
M03671_2.00	NN 70-40%	CisBP	ATTACCATACAAGTGCAC	51.6% identity		Open · Scan
M07764_2.00	NN 70-40%	CisBP	CTGCACTCTCCCCTTCCCCCCCTCCCC	51.6% identity		Open · Scan
M07684_2.00	NN 70-40%	CisBP	CCTGTTCTTGACTTT	51.5% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	51.5% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	51.5% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	51.4% identity		Open · Scan
MA0528.1	NN 70-40%	JASPAR	GGAGGAGGAGGGGGAGGAGGA	51.4% identity		Open · Scan
M00224_2.00	NN 70-40%	CisBP	CCCGCCCC	51.3% identity		Open · Scan
M04463_2.00	NN 70-40%	CisBP	CACCACGCCCA	51.3% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	51.3% identity		Open · Scan
M09008_2.00	NN 70-40%	CisBP	CCCGGCCCCACCCT	51.3% identity		Open · Scan
MA0039.1	NN 70-40%	JASPAR	TAAAGGAAGG	51.3% identity		Open · Scan
MA0039.3	NN 70-40%	JASPAR	CCACACCCTGC	51.3% identity		Open · Scan
MA1515.1	NN 70-40%	JASPAR	CACCACGCCCA	51.3% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	51.2% identity		Open · Scan
M08279_2.00	NN 70-40%	CisBP	CCTCCCTCC	51.2% identity		Open · Scan
M08908_2.00	NN 70-40%	CisBP	GCTGCTGCTTCTGCTG	51.2% identity		Open · Scan
MA1564.1	NN 70-40%	JASPAR	GCCACGCCCCCC	51.2% identity		Open · Scan
M07660_2.00	NN 70-40%	CisBP	CCGCGCCTACCTGAGGGCGCGGGCCTGGGG	51.0% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	50.9% identity		Open · Scan
M08291_2.00	NN 70-40%	CisBP	AATCCAGCCCTAGACTCTCCC	50.7% identity		Open · Scan
M00217_2.00	NN 70-40%	CisBP	TTACTCAATAT	50.6% identity		Open · Scan
M07607_2.00	NN 70-40%	CisBP	GGCTCCACG	50.5% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	50.4% identity		Open · Scan
M07727_2.00	NN 70-40%	CisBP	CGCCGCCTCCCC	50.2% identity		Open · Scan
MA1596.1	NN 70-40%	JASPAR	GCCTCAGCCTCCCGAG	50.2% identity		Open · Scan
M00779_2.00	NN 70-40%	CisBP	GCCACGCCCA	50.0% identity		Open · Scan
M07723_2.00	NN 70-40%	CisBP	CCGCTGCTCCCTGCT	50.0% identity		Open · Scan
M08867_2.00	NN 70-40%	CisBP	CACCCCCTG	50.0% identity		Open · Scan
MA0493.1	NN 70-40%	JASPAR	GGCCACACCCA	50.0% identity		Open · Scan
MA0746.1	NN 70-40%	JASPAR	GCCACGCCCCC	50.0% identity		Open · Scan

ModCRE11

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_sp_Q86UD4_ZN329_HUMAN:369:420_1llm_D_1	ModCRE	Homology model	TACGGCGCCGAA	Region 369-420 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:107:195_2i13_A_1	ModCRE	Homology model	CTTTCAACTTTTGAGTCC	Region 107-195 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5v3j_E_1	ModCRE	Homology model	GCCGCGTGGCCG	Region 107-199 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5v3m_C_1	ModCRE	Homology model	AGCCCCGATCCTTC	Region 107-199 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5wjq_D_1	ModCRE	Homology model	TGCCCGGATGCGGC	Region 107-199 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:125:199_5eh2_F_1	ModCRE	Homology model	CGGGGGGCCCCACGGA	Region 125-199 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:200:478_5wjq_D_1	ModCRE	Homology model	CCCGCCCGCGCCCCCCGCCGCGGACCCC	Region 200-478 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3j_E_1	ModCRE	Homology model	CACCCGGTCCTGGCCCCGGGGGGGTG	Region 203-478 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3m_C_1	ModCRE	Homology model	GGCGACCCCCCCCCCCGGCGCCCCCC	Region 203-478 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:240:393_2i13_A_1	ModCRE	Homology model	GCCTCTAGCCTAGTATGTCAA	Region 240-393 · 1 3D model		Open · Scan
TFS_sp_Q86UD4_ZN329_HUMAN:284:394_5ei9_E_1	ModCRE	Homology model	CCCCAGGGGGAGAGAGG	Region 284-394 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 541 aa

107-199

200-529

Region 107-199 5 PWM

Residues

93 aa

Domains

No overlapping PFAM annotation recorded

3D models

5 active PDBs

Templates

2I13, 5EH2, 5V3J, 5V3M, 5WJQ

Sources

Predicted = Low

Scan this region Show models

Region 200-529 6 PWM

Residues

330 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

7 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

12 active PDB models 6 summary rows

Region 107-1995 models

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:107:195_2i13_A_1	2i13	107-195	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5v3j_E_1	5v3j	107-199	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5v3m_C_1	5v3m	107-199	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:107:199_5wjq_D_1	5wjq	107-199	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:125:199_5eh2_F_1	5eh2	125-199	View model · PDB

Region 200-5297 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_sp_Q86UD4_ZN329_HUMAN:369:420_1llm_D_1	1llm	369-420	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:200:478_5wjq_D_1	5wjq	200-478	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3j_E_1	5v3j	203-478	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3m_C_1	5v3m	203-478	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:231:529_7w1m_H_1	7w1m	231-529	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:240:393_2i13_A_1	2i13	240-393	View model · PDB
Predicted = Low	TFS_sp_Q86UD4_ZN329_HUMAN:284:394_5ei9_E_1	5ei9	284-394	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
4	2i13	199:536	240	393	P:A · DNA:C,D	59.7% / 75.3%	100	View · PDB TFS_sp_Q86UD4_ZN329_HUMAN:240:393_2i13_A_1
1	5wjq	199:536	200	478	P:D · DNA:A,B	54.8% / 70.6%	99	View · PDB TFS_sp_Q86UD4_ZN329_HUMAN:200:478_5wjq_D_1
2	5v3m	199:536	203	478	P:C · DNA:A,B	51.8% / 68.5%	99	View · PDB TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3m_C_1
3	5v3j	199:536	203	478	P:E · DNA:A,B	51.8% / 68.5%	99	View · PDB TFS_sp_Q86UD4_ZN329_HUMAN:203:478_5v3j_E_1
1	1llm	199:536	369,369	420,420	P:C,D · DNA:A,B	44.2% / 63.5%	59,61	View · PDB DIMER_sp_Q86UD4_ZN329_HUMAN:369:420_1llm_D_1
5	7w1m	199:536	231	529	P:H · DNA:F,G	35.4% / 52.9%	92	View · PDB TFS_sp_Q86UD4_ZN329_HUMAN:231:529_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
203-225	PF00096	Zinc finger, C2H2 type	overlaps 200-529
231-253	PF00096	Zinc finger, C2H2 type	overlaps 200-529
259-281	PF00096	Zinc finger, C2H2 type	overlaps 200-529
287-309	PF00096	Zinc finger, C2H2 type	overlaps 200-529
315-337	PF00096	Zinc finger, C2H2 type	overlaps 200-529
343-365	PF00096	Zinc finger, C2H2 type	overlaps 200-529
371-393	PF00096	Zinc finger, C2H2 type	overlaps 200-529
399-421	PF00096	Zinc finger, C2H2 type	overlaps 200-529
429-449	PF00096	Zinc finger, C2H2 type	overlaps 200-529
455-477	PF00096	Zinc finger, C2H2 type	overlaps 200-529
483-505	PF00096	Zinc finger, C2H2 type	overlaps 200-529
512-533	PF00096	Zinc finger, C2H2 type	overlaps 200-529