ModCRE DB

Transcription factor

Q86VK4 - ZNF410

Zinc finger protein 410 (Another partner for ARF 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 478 aa

5 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0752.1 Known JASPAR TCCATCCCATAATACTC Direct PWM Open · Scan
MA0752.2 Known JASPAR CCATCCCATAATACTC Direct PWM Open · Scan
M02882_2.00 Known CisBP GAGTATTATGGGATGGA Direct PWM Open · Scan
M04435_2.00 Known CisBP GTATTATGGGATGG Direct PWM Open · Scan
M04436_2.00 Known CisBP ATATTATGGGATGT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 478 aa
219-334

Region 219-334 0 PWM

Residues
116 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
1UBD
Sources
Structure model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 219-3341 model
Actions
Predicted = Low TFS_Q86VK4:219:334_1ubd_C_1 1ubd 219-334 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
249-273PF00096Zinc finger, C2H2 typeoverlaps 219-334
279-303PF00096Zinc finger, C2H2 typeoverlaps 219-334
311-333PF00096Zinc finger, C2H2 typeoverlaps 219-334
339-361PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions