ModCRE DB

Transcription factor

Q86XA2 - ZNF20

ZNF20 protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 497 aa

70 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)66
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.2% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 65.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 58.8% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 58.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 57.5% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 57.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.3% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 56.3% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 55.8% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 55.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.1% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 55.0% identity Open · Scan
M00022_2.00 NN 70-40% CisBP GGCGCCACAG 54.3% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 54.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.1% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 54.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 54.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 53.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.5% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 53.4% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.3% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 53.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 52.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 52.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 51.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 51.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.3% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.3% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 51.1% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 51.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.9% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.8% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.7% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 50.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q86XA2_Q86XA2_HUMAN:190:466_5wjq_D_1 ModCRE Homology model CCTACTGGGGGGACCCGGGGGGGTTTAA Region 190-466 · 1 3D model Open · Scan
TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3j_E_1 ModCRE Homology model GGCCCCGGTGGGGTCAAGGCCTTCCT Region 221-494 · 1 3D model Open · Scan
TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3m_C_1 ModCRE Homology model GGCCCCGGGGTTGGGGGGGGGGGCCC Region 221-494 · 1 3D model Open · Scan
TFS_tr_Q86XA2_Q86XA2_HUMAN:285:438_2i13_A_1 ModCRE Homology model AAACTACGCCTACTAGCTGAG Region 285-438 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 497 aa
164-494

Region 164-494 4 PWM

Residues
331 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 164-4946 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q86XA2_Q86XA2_HUMAN:274:322_1llm_D_1 1llm 274-322 View model · PDB
Predicted = Low TFS_tr_Q86XA2_Q86XA2_HUMAN:164:453_7w1m_H_1 7w1m 164-453 View model · PDB
Predicted = Low TFS_tr_Q86XA2_Q86XA2_HUMAN:190:466_5wjq_D_1 5wjq 190-466 View model · PDB
Predicted = Low TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3j_E_1 5v3j 221-494 View model · PDB
Predicted = Low TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3m_C_1 5v3m 221-494 View model · PDB
Predicted = Low TFS_tr_Q86XA2_Q86XA2_HUMAN:285:438_2i13_A_1 2i13 285-438 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5v3m 160:494 221 494 P:C · DNA:A,B 53.1% / 72.0% 98 View · PDB TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3m_C_1
2 5v3j 160:494 221 494 P:E · DNA:A,B 53.1% / 72.0% 98 View · PDB TFS_tr_Q86XA2_Q86XA2_HUMAN:221:494_5v3j_E_1
3 5wjq 160:494 190 466 P:D · DNA:A,B 52.9% / 69.4% 98 View · PDB TFS_tr_Q86XA2_Q86XA2_HUMAN:190:466_5wjq_D_1
4 2i13 160:494 285 438 P:A · DNA:C,D 52.6% / 70.8% 100 View · PDB TFS_tr_Q86XA2_Q86XA2_HUMAN:285:438_2i13_A_1
1 1llm 160:494 274,274 322,322 P:C,D · DNA:A,B 44.9% / 63.3% 56,57 View · PDB DIMER_tr_Q86XA2_Q86XA2_HUMAN:274:322_1llm_D_1
5 7w1m 160:494 164 453 P:H · DNA:F,G 35.1% / 50.5% 90 View · PDB TFS_tr_Q86XA2_Q86XA2_HUMAN:164:453_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
192-214PF00096Zinc finger, C2H2 typeoverlaps 164-494
221-242PF00096Zinc finger, C2H2 typeoverlaps 164-494
248-270PF00096Zinc finger, C2H2 typeoverlaps 164-494
276-298PF00096Zinc finger, C2H2 typeoverlaps 164-494
304-326PF13894C2H2-type zinc fingeroverlaps 164-494
334-354PF00096Zinc finger, C2H2 typeoverlaps 164-494
360-382PF13912C2H2-type zinc fingeroverlaps 164-494
388-410PF00096Zinc finger, C2H2 typeoverlaps 164-494
416-438PF00096Zinc finger, C2H2 typeoverlaps 164-494
471-493PF00096Zinc finger, C2H2 typeoverlaps 164-494