Region 241-367 5 PWM
- Residues
- 127 aa
- Domains
- PF00096 · Zinc finger, C2H2 type
- 3D models
- 11 active PDBs · 6 summary rows
- Templates
- 1LLM, 3UK3, 4IS1, 5YJ3, 6E94, 6ML2, 6ML7, 8A4I, ...
- Sources
- Predicted = Low
Transcription factor
Q8IX07 - ZFPM1
Zinc finger protein ZFPM1 (Friend of GATA protein 1) (FOG-1) (Friend of GATA 1) (Zinc finger protein 89A) (Zinc finger protein multitype 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1006 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)4
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M10203_2.00 | NN 70-40% | CisBP | CCCCAAACCACCCC | 56.5% identity | Open · Scan | |
| MA0073.1 | NN 70-40% | JASPAR | CCCCAAACCACCCCCCCCCA | 56.5% identity | Open · Scan | |
| M03583_2.00 | NN 70-40% | CisBP | GGATGCTGTG | 52.0% identity | Open · Scan | |
| MA0738.1 | NN 70-40% | JASPAR | ATGCCCACC | 50.0% identity | Open · Scan |
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q8IX07_FOG1_HUMAN:297:342_3uk3_C_1 | ModCRE | Homology model | AAGGGTCGTGT | Region 297-342 · 1 3D model | Open · Scan | |
| TFS_sp_Q8IX07_FOG1_HUMAN:297:342_3uk3_D_1 | ModCRE | Homology model | TCCGAAAGGT | Region 297-342 · 1 3D model | Open · Scan | |
| TFS_sp_Q8IX07_FOG1_HUMAN:297:342_4is1_C_1 | ModCRE | Homology model | CAGCTTGGTAT | Region 297-342 · 1 3D model | Open · Scan | |
| TFS_sp_Q8IX07_FOG1_HUMAN:297:342_4is1_D_1 | ModCRE | Homology model | ACTGATAGGT | Region 297-342 · 1 3D model | Open · Scan | |
| TFS_sp_Q8IX07_FOG1_HUMAN:297:342_5yj3_C_1 | ModCRE | Homology model | ATACG | Region 297-342 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1006 aa
241-367
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models
6 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 241-36711 models · 6 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_sp_Q8IX07_FOG1_HUMAN:297:338_1llm_D_1 | 1llm | 297-338 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:241:367_6ml2_A_1 | 6ml2 | 241-367 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:241:367_6ml7_A_1 | 6ml7 | 241-367 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:296:342_8a4i_I_1 | 8a4i | 296-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:296:342_8cuc_F_1 | 8cuc | 296-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:342_3uk3_C_1 | 3uk3 | 297-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:342_3uk3_D_1 | 3uk3 | 297-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:342_4is1_C_1 | 4is1 | 297-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:342_4is1_D_1 | 4is1 | 297-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:342_5yj3_C_1 | 5yj3 | 297-342 | View model · PDB |
| Predicted = Low | TFS_sp_Q8IX07_FOG1_HUMAN:297:366_6e94_A_1 | 6e94 | 297-366 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 8cuc | 241:379 | 296 | 342 | P:F · DNA:A,B | 55.3% / 72.3% | 87 | View · PDB TFS_sp_Q8IX07_FOG1_HUMAN:296:342_8cuc_F_1 |
| 2 | 8a4i | 241:379 | 296 | 342 | P:I · DNA:A,B | 55.3% / 72.3% | 87 | View · PDB TFS_sp_Q8IX07_FOG1_HUMAN:296:342_8a4i_I_1 |
| 1 | 1llm | 241:379 | 297,297 | 338,338 | P:C,D · DNA:A,B | 35.7% / 54.8% | 48,49 | View · PDB DIMER_sp_Q8IX07_FOG1_HUMAN:297:338_1llm_D_1 |
| 3 | 6e94 | 241:379 | 297 | 366 | P:A · DNA:C,D | 35.7% / 52.9% | 63 | View · PDB TFS_sp_Q8IX07_FOG1_HUMAN:297:366_6e94_A_1 |
| 4 | 6ml2 | 241:379 | 241 | 367 | P:A · DNA:E,F | 28.8% / 43.2% | 89 | View · PDB TFS_sp_Q8IX07_FOG1_HUMAN:241:367_6ml2_A_1 |
| 5 | 6ml7 | 241:379 | 241 | 367 | P:A · DNA:E,F | 28.8% / 43.2% | 88 | View · PDB TFS_sp_Q8IX07_FOG1_HUMAN:241:367_6ml7_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 89-184 | PF21182 | Zinc finger protein ZFPM1-like, PR domain | No overlap with loaded model regions |
| 292-314 | PF00096 | Zinc finger, C2H2 type | overlaps 241-367 |
| 972-1006 | PF25445 | ZFPM2-like CCHC zinc finger | No overlap with loaded model regions |