ModCRE DB

Transcription factor

Q8IZM8 - ZNF654

Zinc finger protein 654 (Melanoma-associated antigen)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1128 aa

11 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q8IZM8_ZN654_HUMAN:546:590_1llm_D_1 ModCRE Homology model TCCGCGCGCCGT Region 546-590 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:546:595_7txc_E_1 ModCRE Homology model AAGTTAAACGCTA Region 546-595 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1i_A_1 ModCRE Homology model GTGGTTAAAT Region 546-596 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1k_A_1 ModCRE Homology model GTTATTCAAG Region 546-596 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk1_A_1 ModCRE Homology model GTTGTTCCAT Region 546-596 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk2_A_1 ModCRE Homology model GTTGTTCAAC Region 546-596 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1h_A_1 ModCRE Homology model GTCGCGAATG Region 788-839 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1i_A_1 ModCRE Homology model GTTGTGATTG Region 788-839 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1k_A_1 ModCRE Homology model GGTGCGAAAG Region 788-839 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1jk1_A_1 ModCRE Homology model TCCGTTAAGT Region 788-839 · 1 3D model Open · Scan
TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1jk2_A_1 ModCRE Homology model CCCGTGAAAT Region 788-839 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1128 aa
546-596
788-839

Region 546-596 6 PWM

Residues
51 aa
Domains
PF25420 · ZN292-like C2H2 zinc finger PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1A1I, 1A1K, 1JK1, 1JK2, 1LLM, 7TXC
Sources
Predicted = Low
Scan this region Show models

Region 788-839 5 PWM

Residues
52 aa
Domains
No overlapping PFAM annotation recorded
3D models
5 active PDBs
Templates
1A1H, 1A1I, 1A1K, 1JK1, 1JK2
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 546-5966 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8IZM8_ZN654_HUMAN:546:590_1llm_D_1 1llm 546-590 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:546:595_7txc_E_1 7txc 546-595 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1i_A_1 1a1i 546-596 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1k_A_1 1a1k 546-596 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk1_A_1 1jk1 546-596 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk2_A_1 1jk2 546-596 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 523:600 546,546 590,590 P:C,D · DNA:A,B 34.8% / 52.2% 51,52 View · PDB DIMER_sp_Q8IZM8_ZN654_HUMAN:546:590_1llm_D_1
2 1a1k 523:600 546 596 P:A · DNA:B,C 34.6% / 53.8% 60 View · PDB TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1k_A_1
3 1a1i 523:600 546 596 P:A · DNA:B,C 34.6% / 53.8% 60 View · PDB TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1a1i_A_1
4 1jk2 523:600 546 596 P:A · DNA:B,C 34.6% / 53.8% 60 View · PDB TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk2_A_1
5 1jk1 523:600 546 596 P:A · DNA:B,C 34.6% / 53.8% 60 View · PDB TFS_sp_Q8IZM8_ZN654_HUMAN:546:596_1jk1_A_1
1 7txc 523:600 546 595 P:E · DNA:A,B 33.3% / 54.9% 59 View · PDB TFS_sp_Q8IZM8_ZN654_HUMAN:546:595_7txc_E_1
Region 788-8395 models
Actions
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1h_A_1 1a1h 788-839 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1i_A_1 1a1i 788-839 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1a1k_A_1 1a1k 788-839 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1jk1_A_1 1jk1 788-839 View model · PDB
Predicted = Low TFS_sp_Q8IZM8_ZN654_HUMAN:788:839_1jk2_A_1 1jk2 788-839 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
254-472PF25580Zinc finger protein Rlf-like, TPR repeatsNo overlap with loaded model regions
539-566PF25420ZN292-like C2H2 zinc fingeroverlaps 546-596
572-594PF00096Zinc finger, C2H2 typeoverlaps 546-596