Region 208-255 0 PWM
- Residues
- 48 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 1 active PDB
- Templates
- 4QTR
- Sources
- Structure model
Transcription factor
Q8N196 - SIX5
Homeobox protein SIX5 (DM locus-associated homeodomain protein) (Sine oculis homeobox homolog 5)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 739 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M08208_2.00 | Known | CisBP | GAGTTGTAGT | Direct PWM | Open · Scan | |
| M08209_2.00 | Known | CisBP | GGAGTTGT | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
739 aa
208-255
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 208-2551 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_Q8N196:208:255_4qtr_B_1 | 4qtr | 208-255 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 86-196 | PF16878 | Transcriptional regulator, SIX1, N-terminal SD domain | No overlap with loaded model regions |
| 208-257 | PF00046 | Homeodomain | overlaps 208-255 |