Region 81-105 2 PWM
- Residues
- 25 aa
- Domains
- No overlapping PFAM annotation recorded
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 2O8K, 2O9L
- Sources
- Predicted = Low
Transcription factor
Q8N488 - RYBP
RING1 and YY1-binding protein (Apoptin-associating protein 1) (APAP-1) (Death effector domain-associated factor) (DED-associated factor) (YY1 and E4TF1-associated factor 1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 228 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q8N488_RYBP_HUMAN:81:105_2o8k_A_1 | ModCRE | Homology model | CCCCCGGGG | Region 81-105 · 1 3D model | Open · Scan | |
| TFS_sp_Q8N488_RYBP_HUMAN:81:105_2o9l_A_1 | ModCRE | Homology model | CCCGCGGGG | Region 81-105 · 1 3D model | Open · Scan |
No DNA-interacting structure identified
None of the 2 assessable structural models contains a protein–DNA non-hydrogen atom contact within 4.5 Å.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
228 aa
81-105
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 81-1052 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q8N488_RYBP_HUMAN:81:105_2o8k_A_1 | 2o8k | 81-105 | View model · PDB |
| Predicted = Low | TFS_sp_Q8N488_RYBP_HUMAN:81:105_2o9l_A_1 | 2o9l | 81-105 | View model · PDB |
Model-summary evidence imported for this region.
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 22-45 | PF00641 | Zn-finger in Ran binding protein and others | No overlap with loaded model regions |
| 145-177 | PF17219 | Yaf2/RYBP C-terminal binding motif | No overlap with loaded model regions |