ModCRE DB

Transcription factor

Q8N587 - ZNF561

Zinc finger protein 561

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 486 aa

40 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07630_2.00 Known CisBP TTTCTGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 52.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 51.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q8N587_ZN561_HUMAN:193:472_5wjq_D_1 ModCRE Homology model TCGACGGGGCCCCTCCCCCGCCCCCCCC Region 193-472 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3j_E_1 ModCRE Homology model TACCACCAGTTCCCCCCCGGGGGT Region 228-485 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3m_C_1 ModCRE Homology model GGGCCCCCCAACCCCCCCCCCGGGG Region 228-485 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:318:471_2i13_A_1 ModCRE Homology model TTTCAATAGTTTTAGCTAAAA Region 318-471 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:362:472_5egb_A_1 ModCRE Homology model CCCGGGGGGGGGGACCGT Region 362-472 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:362:472_5ei9_E_1 ModCRE Homology model GCCCCCGGGGGGGGGGCC Region 362-472 · 1 3D model Open · Scan
TFS_sp_Q8N587_ZN561_HUMAN:364:472_5eh2_F_1 ModCRE Homology model CCCCCGGGGGGGGGGCATT Region 364-472 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 486 aa
187-485

Region 187-485 7 PWM

Residues
299 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
9 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 6 summary rows
Region 187-4859 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8N587_ZN561_HUMAN:419:470_1llm_C_1 1llm 419-470 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:187:467_7w1m_H_1 7w1m 187-467 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:193:472_5wjq_D_1 5wjq 193-472 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3j_E_1 5v3j 228-485 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3m_C_1 5v3m 228-485 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:318:471_2i13_A_1 2i13 318-471 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:362:472_5egb_A_1 5egb 362-472 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:362:472_5ei9_E_1 5ei9 362-472 View model · PDB
Predicted = Low TFS_sp_Q8N587_ZN561_HUMAN:364:472_5eh2_F_1 5eh2 364-472 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 187:485 419,419 470,470 P:C,D · DNA:A,B 53.8% / 61.5% 59,61 View · PDB DIMER_sp_Q8N587_ZN561_HUMAN:419:470_1llm_C_1
4 2i13 187:485 318 471 P:A · DNA:C,D 51.3% / 67.5% 100 View · PDB TFS_sp_Q8N587_ZN561_HUMAN:318:471_2i13_A_1
1 5wjq 187:485 193 472 P:D · DNA:A,B 49.6% / 66.1% 99 View · PDB TFS_sp_Q8N587_ZN561_HUMAN:193:472_5wjq_D_1
2 5v3m 187:485 228 485 P:C · DNA:A,B 48.4% / 66.7% 93 View · PDB TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3m_C_1
3 5v3j 187:485 228 485 P:E · DNA:A,B 48.4% / 66.7% 93 View · PDB TFS_sp_Q8N587_ZN561_HUMAN:228:485_5v3j_E_1
5 7w1m 187:485 187 467 P:H · DNA:F,G 29.0% / 49.0% 87 View · PDB TFS_sp_Q8N587_ZN561_HUMAN:187:467_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-80PF01352KRAB boxNo overlap with loaded model regions
197-219PF00096Zinc finger, C2H2 typeoverlaps 187-485
281-303PF00096Zinc finger, C2H2 typeoverlaps 187-485
309-331PF00096Zinc finger, C2H2 typeoverlaps 187-485
337-359PF00096Zinc finger, C2H2 typeoverlaps 187-485
365-387PF00096Zinc finger, C2H2 typeoverlaps 187-485
393-415PF00096Zinc finger, C2H2 typeoverlaps 187-485
421-443PF00096Zinc finger, C2H2 typeoverlaps 187-485
449-471PF00096Zinc finger, C2H2 typeoverlaps 187-485