ModCRE DB

Transcription factor

Q8N7M2 - ZNF283

Zinc finger protein 283 (Zinc finger protein HZF19)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 679 aa

76 Generated PWM 7 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07619_2.00 Known CisBP GGGCCAGGCCAGATCAGCCGAGCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)69
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 68.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 60.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 58.5% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.2% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 56.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 55.1% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 55.1% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 54.6% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 54.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 54.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 53.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 53.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 53.2% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.2% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 53.1% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.8% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.6% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 52.4% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 52.4% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 52.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.3% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 52.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 52.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.0% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 51.8% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 51.5% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.0% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.7% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.5% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 50.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.4% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.2% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.1% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.1% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q8N7M2_ZN283_HUMAN:541:592_1llm_D_1 ModCRE Homology model CTCGCGCGCGAA Region 541-592 · 1 3D model Open · Scan
TFS_sp_Q8N7M2_ZN283_HUMAN:288:566_5wjq_D_1 ModCRE Homology model TGGGCCCTTAACTCATTTTTATGGCCCC Region 288-566 · 1 3D model Open · Scan
TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3j_E_1 ModCRE Homology model CCCGGGCCCCTGGGCCCCCCCGGGGA Region 346-622 · 1 3D model Open · Scan
TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3m_C_1 ModCRE Homology model AAAGCCCCCCGGGGGGCTCACCCTGT Region 346-622 · 1 3D model Open · Scan
TFS_sp_Q8N7M2_ZN283_HUMAN:440:593_2i13_A_1 ModCRE Homology model GTGAAGAGGCAGTAGCTAAGG Region 440-593 · 1 3D model Open · Scan
TFS_sp_Q8N7M2_ZN283_HUMAN:456:566_5ei9_E_1 ModCRE Homology model CGCTGGGGGGGGGGGAA Region 456-566 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 679 aa
288-622

Region 288-622 6 PWM

Residues
335 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
7 active PDB models 6 summary rows
Region 288-6227 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8N7M2_ZN283_HUMAN:541:592_1llm_D_1 1llm 541-592 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:288:566_5wjq_D_1 5wjq 288-566 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:291:589_7w1m_H_1 7w1m 291-589 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3j_E_1 5v3j 346-622 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3m_C_1 5v3m 346-622 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:440:593_2i13_A_1 2i13 440-593 View model · PDB
Predicted = Low TFS_sp_Q8N7M2_ZN283_HUMAN:456:566_5ei9_E_1 5ei9 456-566 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 5v3m 235:626 346 622 P:C · DNA:A,B 59.6% / 71.8% 100 View · PDB TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3m_C_1
3 5v3j 235:626 346 622 P:E · DNA:A,B 59.6% / 71.8% 100 View · PDB TFS_sp_Q8N7M2_ZN283_HUMAN:346:622_5v3j_E_1
1 5wjq 235:626 288 566 P:D · DNA:A,B 57.7% / 74.9% 99 View · PDB TFS_sp_Q8N7M2_ZN283_HUMAN:288:566_5wjq_D_1
4 2i13 235:626 440 593 P:A · DNA:C,D 55.8% / 70.8% 100 View · PDB TFS_sp_Q8N7M2_ZN283_HUMAN:440:593_2i13_A_1
1 1llm 235:626 541,541 592,592 P:C,D · DNA:A,B 44.2% / 61.5% 59,61 View · PDB DIMER_sp_Q8N7M2_ZN283_HUMAN:541:592_1llm_D_1
5 7w1m 235:626 291 589 P:H · DNA:F,G 34.1% / 49.7% 92 View · PDB TFS_sp_Q8N7M2_ZN283_HUMAN:291:589_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
72-113PF01352KRAB boxNo overlap with loaded model regions
207-229PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
235-257PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
263-285PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
291-313PF00096Zinc finger, C2H2 typeoverlaps 288-622
347-369PF00096Zinc finger, C2H2 typeoverlaps 288-622
403-425PF13912C2H2-type zinc fingeroverlaps 288-622
431-453PF00096Zinc finger, C2H2 typeoverlaps 288-622
459-481PF00096Zinc finger, C2H2 typeoverlaps 288-622
487-509PF00096Zinc finger, C2H2 typeoverlaps 288-622
515-535PF13912C2H2-type zinc fingeroverlaps 288-622
543-565PF00096Zinc finger, C2H2 typeoverlaps 288-622
571-593PF00096Zinc finger, C2H2 typeoverlaps 288-622
599-621PF00096Zinc finger, C2H2 typeoverlaps 288-622