ModCRE DB

Transcription factor

Q8N7R0 - NANOGP1

Putative homeobox protein NANOG2

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 232 aa

31 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M09139_2.00 NN 70+% CisBP ATTTGCATAACAAAGGA 90.3% identity Open · Scan
Nearest Neighbor (70% - 40%)30
MotifPredictionSourceDNA bindingSupportLogoActions
M00474_2.00 NN 70-40% CisBP TTTATGACC 61.5% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 61.5% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 55.9% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 55.7% identity Open · Scan
M09565_2.00 NN 70-40% CisBP GTTAATGGCC 55.0% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 54.2% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 54.2% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 54.2% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 54.2% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 54.2% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 53.5% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 51.8% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 51.8% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 51.8% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 51.8% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 51.7% identity Open · Scan
M04906_2.00 NN 70-40% CisBP ATAACGAC 51.7% identity Open · Scan
M05179_2.00 NN 70-40% CisBP ATAATTGC 51.7% identity Open · Scan
M09181_2.00 NN 70-40% CisBP TTTAATTGTTTT 51.7% identity Open · Scan
MA0875.1 NN 70-40% JASPAR GCAATTAG 51.7% identity Open · Scan
MA0879.1 NN 70-40% JASPAR CCTAATTATC 51.7% identity Open · Scan
MA0882.1 NN 70-40% JASPAR CCAATTAC 51.7% identity Open · Scan
M02128_2.00 NN 70-40% CisBP ATTAATTA 50.9% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 50.8% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 50.0% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 50.0% identity Open · Scan
M03234_2.00 NN 70-40% CisBP TTTTAATTGGT 50.0% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 50.0% identity Open · Scan
MA0881.1 NN 70-40% JASPAR CCAATTAC 50.0% identity Open · Scan
MA0897.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 232 aa
38-94

Region 38-94 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 38-941 model
Actions
Predicted = Low DIMER_Q8N7R0:38:94_3rkq_A_1 3rkq 38-94 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
40-95PF00046Homeodomainoverlaps 38-94