ModCRE DB

Transcription factor

Q8N8T3

cDNA FLJ38903 fis, clone NT2NE2001252, highly similar to HOMEOBOX PROTEIN HOX-B8

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 243 aa

111 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)11
MotifPredictionSourceDNA bindingSupportLogoActions
MA1502.1 NN 70+% JASPAR GCAATTAC 99.1% identity Open · Scan
M09214_2.00 NN 70+% CisBP GCATTAATCAA 98.9% identity Open · Scan
MA0913.1 NN 70+% JASPAR GCAATAAAAA 75.4% identity Open · Scan
MA0485.1 NN 70+% JASPAR GGCCATAAATCAC 74.5% identity Open · Scan
MA0485.2 NN 70+% JASPAR GTCGTAAAAT 74.5% identity Open · Scan
M06248_2.00 NN 70+% CisBP TAATTGCC 73.6% identity Open · Scan
MA0594.1 NN 70+% JASPAR GCCATAAATCA 73.6% identity Open · Scan
MA0594.2 NN 70+% JASPAR GTCGTAAACG 73.6% identity Open · Scan
M06549_2.00 NN 70+% CisBP TTAATGA 72.2% identity Open · Scan
M00494_2.00 NN 70+% CisBP TTAATTACC 70.8% identity Open · Scan
MA1497.1 NN 70+% JASPAR GGTAATTAAC 70.8% identity Open · Scan
Nearest Neighbor (70% - 40%)100
MotifPredictionSourceDNA bindingSupportLogoActions
M00392_2.00 NN 70-40% CisBP TTAATTAC 69.1% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 68.4% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 67.2% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 66.6% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 66.2% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 65.6% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 65.6% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 65.4% identity Open · Scan
M00492_2.00 NN 70-40% CisBP TAATTAGC 64.8% identity Open · Scan
M05100_2.00 NN 70-40% CisBP TTAACGAC 64.8% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 64.5% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 64.5% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 63.3% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 63.1% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 62.9% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 62.9% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 62.9% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 62.9% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 62.3% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 62.3% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 62.3% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 62.3% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 62.3% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 62.2% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 61.2% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 61.1% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 60.4% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 60.4% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 60.3% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 60.3% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 60.3% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 60.2% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 59.6% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 59.6% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 59.6% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 59.4% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 59.4% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 59.4% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 59.2% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 59.2% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 58.9% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 58.6% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 58.6% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 58.6% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 58.1% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 58.1% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 57.8% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 57.8% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 57.8% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 57.8% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 57.8% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 57.8% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 57.8% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 57.8% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 57.8% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 57.3% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 57.3% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 57.3% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 57.1% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 56.8% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 56.4% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 56.1% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 56.1% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 56.1% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 56.1% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 56.1% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 55.5% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 55.4% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 55.4% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 55.1% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 54.8% identity Open · Scan
M02062_2.00 NN 70-40% CisBP TTAATGGGCT 54.0% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 53.7% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 53.4% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 53.3% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 53.1% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 52.5% identity Open · Scan
M01250_2.00 NN 70-40% CisBP TCAATAATTG 52.3% identity Open · Scan
M02046_2.00 NN 70-40% CisBP TCATTAATTAT 52.3% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 51.9% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 51.4% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 50.9% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 50.8% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 50.8% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 50.8% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 50.8% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 50.8% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 50.7% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 50.6% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 50.4% identity Open · Scan
M00496_2.00 NN 70-40% CisBP TTAAGTGGTT 50.0% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 50.0% identity Open · Scan
M06219_2.00 NN 70-40% CisBP GTTAATCC 50.0% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 50.0% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M06900_2.00 NN 70-40% CisBP TCAATAATTAA 50.0% identity Open · Scan
M06912_2.00 NN 70-40% CisBP TCAATAATTGA 50.0% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 50.0% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 50.0% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 243 aa
135-204

Region 135-204 0 PWM

Residues
70 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1B8I
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 135-2041 model
Actions
Predicted = Low DIMER_Q8N8T3:135:204_1b8i_A_1 1b8i 135-204 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
147-203PF00046Homeodomainoverlaps 135-204