ModCRE DB

Transcription factor

Q8N9F8 - ZNF454

Zinc finger protein 454

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 522 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known9
MotifPredictionSourceDNA bindingSupportLogoActions
M08256_2.00 Known CisBP GTGCCTT Direct PWM Open · Scan
MA1712.1 Known JASPAR AGGCTCCGGGCCCCGGGG Direct PWM Open · Scan
MA1712.2 Known JASPAR GGCTCCGGGCCCCGGGG Direct PWM Open · Scan
M04571_2.00 Known CisBP TGGCGCCTGGCGCCA Direct PWM Open · Scan
M04572_2.00 Known CisBP TGGCGCCGGCGCCA Direct PWM Open · Scan
M04573_2.00 Known CisBP TGGCGCCTGGCGCCA Direct PWM Open · Scan
M04574_2.00 Known CisBP TGGCGCCGGCGCCA Direct PWM Open · Scan
M07651_2.00 Known CisBP CGGAAACCCCCCAGGGCCCGGAGCCTTTT Direct PWM Open · Scan
M08346_2.00 Known CisBP TAAACCCATCAGGGCCTGGAGCCTTTT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 522 aa
213-491

Region 213-491 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 213-4911 model
Actions
Predicted = Low TFS_Q8N9F8:213:491_5wjq_D_1 5wjq 213-491 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-54PF01352KRAB boxNo overlap with loaded model regions
178-200PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
216-238PF00096Zinc finger, C2H2 typeoverlaps 213-491
244-266PF00096Zinc finger, C2H2 typeoverlaps 213-491
272-294PF00096Zinc finger, C2H2 typeoverlaps 213-491
300-322PF00096Zinc finger, C2H2 typeoverlaps 213-491
328-350PF00096Zinc finger, C2H2 typeoverlaps 213-491
356-378PF00096Zinc finger, C2H2 typeoverlaps 213-491
384-406PF00096Zinc finger, C2H2 typeoverlaps 213-491
412-434PF00096Zinc finger, C2H2 typeoverlaps 213-491
440-462PF00096Zinc finger, C2H2 typeoverlaps 213-491
468-490PF00096Zinc finger, C2H2 typeoverlaps 213-491
496-518PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions