ModCRE DB

Transcription factor

Q8N9U5 - ZBTB41

Zinc finger and BTB domain containing 41 (cDNA FLJ36199 fis, clone TESTI2028253, weakly similar to ZINC FINGER PROTEIN 135)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 428 aa

12 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 56.2% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 54.9% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:145_5ei9_E_1 ModCRE Homology model CCGCCCCCCGGGGGCCA Region 36-145 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:171_2i13_A_1 ModCRE Homology model GCCCGCTAGCCATGGCGCTAC Region 36-171 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:261_5wjq_D_1 ModCRE Homology model CCGGGGGGCCCCTCCCCCGCCAGA Region 36-261 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1g_A_1 ModCRE Homology model CGGGGGCCCC Region 3-55 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1h_A_1 ModCRE Homology model CCCGGGCCGG Region 3-55 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1j_A_1 ModCRE Homology model GGGGGGCCCG Region 3-55 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1jk1_A_1 ModCRE Homology model GCGGGGCCCC Region 3-55 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1jk2_A_1 ModCRE Homology model GGGGGGCCCC Region 3-55 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3j_E_1 ModCRE Homology model CCGGGGGGCCCGGACCCCCCACC Region 9-261 · 1 3D model Open · Scan
TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3m_C_1 ModCRE Homology model CCCCCCGGGCCCCGGACCCCCCCA Region 9-261 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 428 aa
3-264

Region 3-264 10 PWM

Residues
262 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
12 active PDBs · 6 summary rows
Templates
1A1G, 1A1H, 1A1J, 1JK1, 1JK2, 1LLM, 2I13, 5EI9, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 3-26412 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q8N9U5_Q8N9U5_HUMAN:120:174_1llm_D_1 1llm 120-174 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:145_5ei9_E_1 5ei9 36-145 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:171_2i13_A_1 2i13 36-171 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:261_5wjq_D_1 5wjq 36-261 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1g_A_1 1a1g 3-55 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1h_A_1 1a1h 3-55 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1a1j_A_1 1a1j 3-55 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1jk1_A_1 1jk1 3-55 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:3:55_1jk2_A_1 1jk2 3-55 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:8:264_8ssr_A_1 8ssr 8-264 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3j_E_1 5v3j 9-261 View model · PDB
Predicted = Low TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3m_C_1 5v3m 9-261 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 4:269 36 171 P:A · DNA:C,D 46.3% / 64.7% 89 View · PDB TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:171_2i13_A_1
1 1llm 4:269 120,120 174,174 P:C,D · DNA:A,B 40.0% / 54.5% 63,64 View · PDB DIMER_tr_Q8N9U5_Q8N9U5_HUMAN:120:174_1llm_D_1
3 5wjq 4:269 36 261 P:D · DNA:A,B 38.9% / 54.0% 77 View · PDB TFS_tr_Q8N9U5_Q8N9U5_HUMAN:36:261_5wjq_D_1
1 5v3m 4:269 9 261 P:C · DNA:A,B 38.4% / 54.1% 87 View · PDB TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3m_C_1
2 5v3j 4:269 9 261 P:E · DNA:A,B 38.4% / 54.1% 87 View · PDB TFS_tr_Q8N9U5_Q8N9U5_HUMAN:9:261_5v3j_E_1
5 8ssr 4:269 8 264 P:A · DNA:B,C 33.0% / 48.7% 95 View · PDB TFS_tr_Q8N9U5_Q8N9U5_HUMAN:8:264_8ssr_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
37-56PF00096Zinc finger, C2H2 typeoverlaps 3-264
67-88PF00096Zinc finger, C2H2 typeoverlaps 3-264
122-144PF00096Zinc finger, C2H2 typeoverlaps 3-264
150-173PF00096Zinc finger, C2H2 typeoverlaps 3-264
187-209PF00096Zinc finger, C2H2 typeoverlaps 3-264
215-237PF00096Zinc finger, C2H2 typeoverlaps 3-264