ModCRE DB

Transcription factor

Q8N9Z0 - ZNF610

Zinc finger protein 610

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 462 aa

68 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known4
MotifPredictionSourceDNA bindingSupportLogoActions
MA1713.1 Known JASPAR CCCGCCGCTCCCCC Direct PWM Open · Scan
MA1713.2 Known JASPAR CCGCCGCTCC Direct PWM Open · Scan
M07616_2.00 Known CisBP CGCCGCTCC Direct PWM Open · Scan
M08327_2.00 Known CisBP CGCCGCTCC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)56
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 66.6% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 66.3% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 63.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.9% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 59.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 59.0% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 59.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 58.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.9% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 57.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.8% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 56.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 56.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 55.2% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.7% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 54.6% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 54.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 54.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.0% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 53.8% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 53.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 52.7% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.4% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 52.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.2% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 52.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 51.9% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 51.8% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.1% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.7% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.0% identity Open · Scan
ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q8N9Z0_ZN610_HUMAN:204:450_5wjq_D_1 ModCRE Homology model CCGCCCCCCCGTTTCCCCCGGGCCGCGA Region 204-450 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3j_E_1 ModCRE Homology model GCCCCCCCCCCGGGGCCCCGAGG Region 204-453 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3m_C_1 ModCRE Homology model GGCCCCCCACACGAGCCCTGCCGG Region 204-453 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:229:339_5egb_A_1 ModCRE Homology model CGGCCCCCTGGAGCGGGG Region 229-339 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:229:339_5ei9_E_1 ModCRE Homology model CCCCCCCCGGGGGCCGG Region 229-339 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:231:339_5eh2_F_1 ModCRE Homology model GGCCAGAGGGGGGGCGGGG Region 231-339 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:231:341_6e94_A_1 ModCRE Homology model TTCCGCCCGGCGCCGGCG Region 231-341 · 1 3D model Open · Scan
TFS_sp_Q8N9Z0_ZN610_HUMAN:269:422_2i13_A_1 ModCRE Homology model TTGGGCTACGGGCGTGGGGGC Region 269-422 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 462 aa
204-454

Region 204-454 8 PWM

Residues
251 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 204-45410 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8N9Z0_ZN610_HUMAN:398:449_1llm_D_1 1llm 398-449 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:204:450_5wjq_D_1 5wjq 204-450 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3j_E_1 5v3j 204-453 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3m_C_1 5v3m 204-453 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:204:454_7w1m_H_1 7w1m 204-454 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:229:339_5egb_A_1 5egb 229-339 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:229:339_5ei9_E_1 5ei9 229-339 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:231:339_5eh2_F_1 5eh2 231-339 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:231:341_6e94_A_1 6e94 231-341 View model · PDB
Predicted = Low TFS_sp_Q8N9Z0_ZN610_HUMAN:269:422_2i13_A_1 2i13 269-422 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 204:454 269 422 P:A · DNA:C,D 56.5% / 67.5% 100 View · PDB TFS_sp_Q8N9Z0_ZN610_HUMAN:269:422_2i13_A_1
1 5wjq 204:454 204 450 P:D · DNA:A,B 52.6% / 66.8% 87 View · PDB TFS_sp_Q8N9Z0_ZN610_HUMAN:204:450_5wjq_D_1
2 5v3m 204:454 204 453 P:C · DNA:A,B 50.4% / 65.2% 90 View · PDB TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3m_C_1
3 5v3j 204:454 204 453 P:E · DNA:A,B 50.4% / 65.2% 90 View · PDB TFS_sp_Q8N9Z0_ZN610_HUMAN:204:453_5v3j_E_1
1 1llm 204:454 398,398 449,449 P:C,D · DNA:A,B 44.2% / 63.5% 59,61 View · PDB DIMER_sp_Q8N9Z0_ZN610_HUMAN:398:449_1llm_D_1
5 7w1m 204:454 204 454 P:H · DNA:F,G 37.5% / 51.2% 77 View · PDB TFS_sp_Q8N9Z0_ZN610_HUMAN:204:454_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-64PF01352KRAB boxNo overlap with loaded model regions
232-254PF00096Zinc finger, C2H2 typeoverlaps 204-454
274-298PF13465Zinc-finger double domainoverlaps 204-454
316-338PF00096Zinc finger, C2H2 typeoverlaps 204-454
344-366PF00096Zinc finger, C2H2 typeoverlaps 204-454
372-394PF00096Zinc finger, C2H2 typeoverlaps 204-454
400-422PF00096Zinc finger, C2H2 typeoverlaps 204-454
428-450PF00096Zinc finger, C2H2 typeoverlaps 204-454