Region 43-123 2 PWM
- Residues
- 81 aa
- Domains
- PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
- 3D models
- 3 active PDBs · 1 summary row
- Templates
- 1LLM, 4GZN, 4M9V
- Sources
- Predicted = Low
Transcription factor
Q8NAF0 - ZNF579
Zinc finger protein 579
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 562 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M08417_2.00 | NN 70-40% | CisBP | TACCTA | 52.9% identity | Open · Scan | |
| M07757_2.00 | NN 70-40% | CisBP | CCGCGGCC | 51.9% identity | Open · Scan | |
| M01032_2.00 | NN 70-40% | CisBP | ACCCCTGA | 50.0% identity | Open · Scan |
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q8NAF0_ZN579_HUMAN:384:463_2kmk_A_1 | ModCRE | Homology model | CCCCCGGGGGCGGGCC | Region 384-463 · 1 3D model | Open · Scan | |
| TFS_sp_Q8NAF0_ZN579_HUMAN:385:434_5yj3_C_1 | ModCRE | Homology model | CCCCG | Region 385-434 · 1 3D model | Open · Scan | |
| TFS_sp_Q8NAF0_ZN579_HUMAN:389:463_5keb_A_1 | ModCRE | Homology model | CCGCGGCGGG | Region 389-463 · 1 3D model | Open · Scan | |
| TFS_sp_Q8NAF0_ZN579_HUMAN:43:94_4gzn_C_1 | ModCRE | Homology model | ACCGCCCCCC | Region 43-94 · 1 3D model | Open · Scan | |
| TFS_sp_Q8NAF0_ZN579_HUMAN:43:94_4m9v_C_1 | ModCRE | Homology model | ACCGTCCCCC | Region 43-94 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
562 aa
43-123
268-466
Region 268-466 3 PWM
- Residues
- 199 aa
- Domains
- PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
- 3D models
- 8 active PDBs · 5 summary rows
- Templates
- 2I13, 2KMK, 5EI9, 5KEB, 5V3J, 5V3M, 5WJQ, 5YJ3
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models
6 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 43-1233 models · 1 summary row
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_sp_Q8NAF0_ZN579_HUMAN:69:123_1llm_D_1 | 1llm | 69-123 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:43:94_4gzn_C_1 | 4gzn | 43-94 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:43:94_4m9v_C_1 | 4m9v | 43-94 | View model · PDB |
Model-summary evidence imported for this region.
Region 268-4668 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:268:463_5wjq_D_1 | 5wjq | 268-463 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:268:466_5v3j_E_1 | 5v3j | 268-466 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:268:466_5v3m_C_1 | 5v3m | 268-466 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:376:463_5ei9_E_1 | 5ei9 | 376-463 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:376:466_2i13_A_1 | 2i13 | 376-466 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:384:463_2kmk_A_1 | 2kmk | 384-463 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:385:434_5yj3_C_1 | 5yj3 | 385-434 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NAF0_ZN579_HUMAN:389:463_5keb_A_1 | 5keb | 389-463 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 3 | 2i13 | 266:469 | 376 | 466 | P:A · DNA:C,D | 45.1% / 58.2% | 59 | View · PDB TFS_sp_Q8NAF0_ZN579_HUMAN:376:466_2i13_A_1 |
| 5 | 5ei9 | 266:469 | 376 | 463 | P:E · DNA:A,B | 43.2% / 58.0% | 78 | View · PDB TFS_sp_Q8NAF0_ZN579_HUMAN:376:463_5ei9_E_1 |
| 4 | 5wjq | 266:469 | 268 | 463 | P:D · DNA:A,B | 32.7% / 44.4% | 68 | View · PDB TFS_sp_Q8NAF0_ZN579_HUMAN:268:463_5wjq_D_1 |
| 1 | 5v3m | 266:469 | 268 | 466 | P:C · DNA:A,B | 32.7% / 44.2% | 70 | View · PDB TFS_sp_Q8NAF0_ZN579_HUMAN:268:466_5v3m_C_1 |
| 2 | 5v3j | 266:469 | 268 | 466 | P:E · DNA:A,B | 32.7% / 44.2% | 70 | View · PDB TFS_sp_Q8NAF0_ZN579_HUMAN:268:466_5v3j_E_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 45-66 | PF00096 | Zinc finger, C2H2 type | overlaps 43-123 |
| 72-94 | PF00096 | Zinc finger, C2H2 type | overlaps 43-123 |
| 270-292 | PF00096 | Zinc finger, C2H2 type | overlaps 268-466 |
| 298-320 | PF00096 | Zinc finger, C2H2 type | overlaps 268-466 |
| 386-406 | PF00096 | Zinc finger, C2H2 type | overlaps 268-466 |
| 412-434 | PF00096 | Zinc finger, C2H2 type | overlaps 268-466 |
| 441-461 | PF00096 | Zinc finger, C2H2 type | overlaps 268-466 |