ModCRE DB

Transcription factor

Q8NC84

cDNA FLJ90420 fis, clone NT2RP3000232, weakly similar to ZINC FINGER PROTEIN 184

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 399 aa

79 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)73
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 62.6% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.9% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.9% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 61.6% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 61.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 61.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.1% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 60.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 59.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 58.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 58.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 56.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 55.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 55.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.6% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 53.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.6% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.2% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 53.0% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 53.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.9% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.9% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 52.6% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 52.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.4% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 52.2% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 52.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.1% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.7% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 51.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.6% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.6% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.3% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 50.9% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.9% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.6% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.6% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.3% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.0% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.0% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_Q8NC84_Q8NC84_HUMAN:227:278_1llm_D_1 ModCRE Homology model CCCTCGCGCAAT Region 227-278 · 1 3D model Open · Scan
TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3j_E_1 ModCRE Homology model CGCTAAGGTGGGGCGGGGGCCCCACC Region 120-392 · 1 3D model Open · Scan
TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3m_C_1 ModCRE Homology model GGGGGGGGTCCCGGGCGGGGGAGCCG Region 120-392 · 1 3D model Open · Scan
TFS_tr_Q8NC84_Q8NC84_HUMAN:161:392_5wjq_D_1 ModCRE Homology model GGGGCGGGGGCGACTCGGGGCAGGATCC Region 161-392 · 1 3D model Open · Scan
TFS_tr_Q8NC84_Q8NC84_HUMAN:210:363_2i13_A_1 ModCRE Homology model TTGAAGTGTTGTTCTATGAGC Region 210-363 · 1 3D model Open · Scan
TFS_tr_Q8NC84_Q8NC84_HUMAN:254:364_5ei9_E_1 ModCRE Homology model CCCCGCCGCCCGGGGCA Region 254-364 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 399 aa
120-392

Region 120-392 6 PWM

Residues
273 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 120-3926 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_Q8NC84_Q8NC84_HUMAN:227:278_1llm_D_1 1llm 227-278 View model · PDB
Predicted = Low TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3j_E_1 5v3j 120-392 View model · PDB
Predicted = Low TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3m_C_1 5v3m 120-392 View model · PDB
Predicted = Low TFS_tr_Q8NC84_Q8NC84_HUMAN:161:392_5wjq_D_1 5wjq 161-392 View model · PDB
Predicted = Low TFS_tr_Q8NC84_Q8NC84_HUMAN:210:363_2i13_A_1 2i13 210-363 View model · PDB
Predicted = Low TFS_tr_Q8NC84_Q8NC84_HUMAN:254:364_5ei9_E_1 5ei9 254-364 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 120:393 254 364 P:E · DNA:A,B 56.8% / 68.5% 100 View · PDB TFS_tr_Q8NC84_Q8NC84_HUMAN:254:364_5ei9_E_1
4 2i13 120:393 210 363 P:A · DNA:C,D 55.2% / 67.5% 100 View · PDB TFS_tr_Q8NC84_Q8NC84_HUMAN:210:363_2i13_A_1
1 5wjq 120:393 161 392 P:D · DNA:A,B 46.4% / 64.4% 82 View · PDB TFS_tr_Q8NC84_Q8NC84_HUMAN:161:392_5wjq_D_1
2 5v3m 120:393 120 392 P:C · DNA:A,B 42.5% / 57.1% 98 View · PDB TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3m_C_1
3 5v3j 120:393 120 392 P:E · DNA:A,B 42.5% / 57.1% 98 View · PDB TFS_tr_Q8NC84_Q8NC84_HUMAN:120:392_5v3j_E_1
1 1llm 120:393 227,227 278,278 P:C,D · DNA:A,B 40.4% / 57.7% 59,61 View · PDB DIMER_tr_Q8NC84_Q8NC84_HUMAN:227:278_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
201-223PF00096Zinc finger, C2H2 typeoverlaps 120-392
229-251PF00096Zinc finger, C2H2 typeoverlaps 120-392
257-279PF00096Zinc finger, C2H2 typeoverlaps 120-392
285-307PF00096Zinc finger, C2H2 typeoverlaps 120-392
313-335PF00096Zinc finger, C2H2 typeoverlaps 120-392
341-363PF00096Zinc finger, C2H2 typeoverlaps 120-392
369-391PF00096Zinc finger, C2H2 typeoverlaps 120-392