ModCRE DB

Transcription factor

Q8NDQ6 - ZNF540

Zinc finger protein 540

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 660 aa

1 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07634_2.00 Known CisBP AAACGTCCACG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 660 aa
324-602

Region 324-602 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 324-6021 model
Actions
Predicted = Low TFS_Q8NDQ6:324:602_5wjq_D_1 5wjq 324-602 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
5-46PF01352KRAB boxNo overlap with loaded model regions
187-209PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
215-237PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
243-265PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
271-293PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
299-309PF13912C2H2-type zinc fingerNo overlap with loaded model regions
327-349PF00096Zinc finger, C2H2 typeoverlaps 324-602
355-377PF00096Zinc finger, C2H2 typeoverlaps 324-602
383-405PF00096Zinc finger, C2H2 typeoverlaps 324-602
411-433PF00096Zinc finger, C2H2 typeoverlaps 324-602
439-461PF00096Zinc finger, C2H2 typeoverlaps 324-602
467-489PF00096Zinc finger, C2H2 typeoverlaps 324-602
495-517PF00096Zinc finger, C2H2 typeoverlaps 324-602
523-545PF00096Zinc finger, C2H2 typeoverlaps 324-602
551-573PF00096Zinc finger, C2H2 typeoverlaps 324-602
579-601PF00096Zinc finger, C2H2 typeoverlaps 324-602
607-629PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
635-657PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions