ModCRE DB

Transcription factor

Q8NEK5 - ZNF548

Zinc finger protein 548

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 533 aa

58 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07691_2.00 NN 70+% CisBP CCTGCAGCCACCTTGGCCTTG 99.4% identity Open · Scan
Nearest Neighbor (70% - 40%)57
MotifPredictionSourceDNA bindingSupportLogoActions
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.9% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.6% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 57.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 57.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 55.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 55.1% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 54.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.0% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 53.7% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.3% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 53.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.3% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 53.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 53.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 53.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.9% identity Open · Scan
M07680_2.00 NN 70-40% CisBP AACCCCAAC 52.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.8% identity Open · Scan
M07688_2.00 NN 70-40% CisBP GAGCCCCAAGCA 52.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 52.1% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 52.1% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 52.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.9% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.9% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.8% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.7% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 51.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.6% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.6% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.6% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.4% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 533 aa
197-472

Region 197-472 0 PWM

Residues
276 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 197-4721 model
Actions
Predicted = Low TFS_Q8NEK5:197:472_5v3j_E_1 5v3j 197-472 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-48PF01352KRAB boxNo overlap with loaded model regions
197-219PF00096Zinc finger, C2H2 typeoverlaps 197-472
225-247PF00096Zinc finger, C2H2 typeoverlaps 197-472
253-275PF00096Zinc finger, C2H2 typeoverlaps 197-472
281-303PF00096Zinc finger, C2H2 typeoverlaps 197-472
309-331PF00096Zinc finger, C2H2 typeoverlaps 197-472
337-359PF00096Zinc finger, C2H2 typeoverlaps 197-472
365-387PF00096Zinc finger, C2H2 typeoverlaps 197-472
393-415PF00096Zinc finger, C2H2 typeoverlaps 197-472
421-443PF00096Zinc finger, C2H2 typeoverlaps 197-472
449-471PF00096Zinc finger, C2H2 typeoverlaps 197-472
477-499PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions