ModCRE DB

Transcription factor

Q8NEM1 - ZNF680

Zinc finger protein 680

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 530 aa

6 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known6
MotifPredictionSourceDNA bindingSupportLogoActions
M08921_2.00 Known CisBP CCTCATTCTTCTTGGACATG Direct PWM Open · Scan
MA1729.1 Known JASPAR GTCCAAGAAGAATGA Direct PWM Open · Scan
MA1729.2 Known JASPAR CCAAGAAGAAT Direct PWM Open · Scan
M07637_2.00 Known CisBP CCCTAATTCTTCTTGGCCCTG Direct PWM Open · Scan
M08343_2.00 Known CisBP TTATTCTTCTTGGTCATGGGA Direct PWM Open · Scan
ZN680_HUMAN.H11MO.0.C Known HOCOMOCO CATGTCCAAGAAGAATGAGG Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 530 aa
235-513

Region 235-513 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 235-5131 model
Actions
Predicted = Low TFS_Q8NEM1:235:513_5wjq_D_1 5wjq 235-513 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
12-53PF01352KRAB boxNo overlap with loaded model regions
182-204PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
210-233PF13912C2H2-type zinc fingerNo overlap with loaded model regions
238-260PF00096Zinc finger, C2H2 typeoverlaps 235-513
294-316PF13912C2H2-type zinc fingeroverlaps 235-513
322-344PF00096Zinc finger, C2H2 typeoverlaps 235-513
350-372PF00096Zinc finger, C2H2 typeoverlaps 235-513
392-416PF13465Zinc-finger double domainoverlaps 235-513
434-456PF00096Zinc finger, C2H2 typeoverlaps 235-513
490-512PF00096Zinc finger, C2H2 typeoverlaps 235-513