ModCRE DB

Transcription factor

Q8NF99 - ZNF397

Zinc finger protein 397 (Zinc finger and SCAN domain-containing protein 15) (Zinc finger protein 47)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 534 aa

128 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70+% CisBP CCACCTCA 71.7% identity Open · Scan
Nearest Neighbor (70% - 40%)127
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 69.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 68.2% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 67.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 67.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 66.6% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 66.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 65.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 65.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 64.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 64.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 63.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 63.3% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 62.6% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 62.3% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 61.4% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 61.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 60.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 60.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 60.5% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 60.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 60.3% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 60.3% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 60.3% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 59.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 59.9% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 59.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 59.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 59.6% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 59.3% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 59.3% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 59.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 59.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 59.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 59.1% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 58.9% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 58.7% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 58.5% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 58.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.1% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 58.1% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 58.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 57.9% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 57.9% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 57.6% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 57.1% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 57.1% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 57.1% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 57.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 57.1% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 56.9% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.9% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 56.8% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 56.8% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 56.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.7% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 56.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.6% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 56.5% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 56.4% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 56.2% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 56.2% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 56.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 55.5% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 55.3% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 55.2% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 55.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 55.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 54.9% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 54.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.7% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 54.6% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.6% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 54.5% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 54.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 54.4% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 54.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 54.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 53.8% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.7% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 53.6% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 53.5% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 53.4% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 53.4% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 53.3% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 53.3% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 53.3% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 53.0% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 52.8% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 52.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.7% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.6% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 52.5% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 52.2% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 51.9% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 51.7% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 51.7% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.6% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 51.5% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.5% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 51.5% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 51.3% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 51.2% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.8% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.2% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 50.0% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 50.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 534 aa
276-532

Region 276-532 0 PWM

Residues
257 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 276-5321 model
Actions
Predicted = Low TFS_Q8NF99:276:532_5v3j_E_1 5v3j 276-532 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
46-134PF02023SCAN domainNo overlap with loaded model regions
285-307PF00096Zinc finger, C2H2 typeoverlaps 276-532
313-335PF00096Zinc finger, C2H2 typeoverlaps 276-532
341-363PF00096Zinc finger, C2H2 typeoverlaps 276-532
369-391PF00096Zinc finger, C2H2 typeoverlaps 276-532
397-419PF00096Zinc finger, C2H2 typeoverlaps 276-532
425-447PF00096Zinc finger, C2H2 typeoverlaps 276-532
453-475PF00096Zinc finger, C2H2 typeoverlaps 276-532
481-503PF00096Zinc finger, C2H2 typeoverlaps 276-532
509-531PF00096Zinc finger, C2H2 typeoverlaps 276-532