Region 1125-1234 2 PWM
- Residues
- 110 aa
- Domains
- PF01388 · ARID/BRIGHT DNA binding domain
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 1KQQ, 2OEH
- Sources
- Predicted = Low
Transcription factor
Q8NFD5 - ARID1B
AT-rich interactive domain-containing protein 1B (ARID domain-containing protein 1B) (BRG1-associated factor 250b) (BAF250B) (BRG1-binding protein hELD/OSA1) (Osa homolog 2) (hOsa2) (p250R)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 2319 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q8NFD5_ARI1B_HUMAN:1125:1225_1kqq_A_1 | ModCRE | Homology model | AATAACAAAAATA | Region 1125-1225 · 1 3D model | Open · Scan | |
| TFS_sp_Q8NFD5_ARI1B_HUMAN:1149:1234_2oeh_A_1 | ModCRE | Homology model | TTGTTTCGTACTA | Region 1149-1234 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
2319 aa
1125-1234
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1125-12342 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q8NFD5_ARI1B_HUMAN:1125:1225_1kqq_A_1 | 1kqq | 1125-1225 | View model · PDB |
| Predicted = Low | TFS_sp_Q8NFD5_ARI1B_HUMAN:1149:1234_2oeh_A_1 | 2oeh | 1149-1234 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 1kqq | 1125:1234 | 1125 | 1225 | P:A · DNA:B,C | 38.2% / 69.6% | 77 | View · PDB TFS_sp_Q8NFD5_ARI1B_HUMAN:1125:1225_1kqq_A_1 |
| 2 | 2oeh | 1125:1234 | 1149 | 1234 | P:A · DNA:B,C | 22.1% / 55.8% | 80 | View · PDB TFS_sp_Q8NFD5_ARI1B_HUMAN:1149:1234_2oeh_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 1139-1223 | PF01388 | ARID/BRIGHT DNA binding domain | overlaps 1125-1234 |
| 2010-2265 | PF12031 | SWI/SNF-like complex subunit BAF250/Osa | No overlap with loaded model regions |