ModCRE DB

Transcription factor

Q8NHY6 - ZFP28

Zinc finger protein 28 homolog (Zfp-28) (Krueppel-like zinc finger factor X6)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 868 aa

3 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
M08949_2.00 Known CisBP TTCTATTTCTTCTTGTGTCA Direct PWM Open · Scan
M08378_2.00 Known CisBP GGACTATTTATGATTTCTATTTCTTCTGGTGTC Direct PWM Open · Scan
ZFP28_HUMAN.H11MO.0.C Known HOCOMOCO TTCTATTTCTTCTTGTGTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 868 aa
448-609

Region 448-609 0 PWM

Residues
162 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 448-6091 model
Actions
Predicted = Low TFS_Q8NHY6:448:609_5t0u_A_1 5t0u 448-609 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
102-143PF01352KRAB boxNo overlap with loaded model regions
231-268PF01352KRAB boxNo overlap with loaded model regions
420-442PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
448-468PF00096Zinc finger, C2H2 typeoverlaps 448-609
476-499PF00096Zinc finger, C2H2 typeoverlaps 448-609
533-555PF00096Zinc finger, C2H2 typeoverlaps 448-609
561-583PF00096Zinc finger, C2H2 typeoverlaps 448-609
589-611PF00096Zinc finger, C2H2 typeoverlaps 448-609
617-639PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
645-667PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
673-695PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
701-723PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
729-751PF13912C2H2-type zinc fingerNo overlap with loaded model regions
757-779PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
785-807PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions