ModCRE DB

Transcription factor

Q8TA94 - ZNF563

Zinc finger protein 563

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 476 aa

41 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known3
MotifPredictionSourceDNA bindingSupportLogoActions
M08368_2.00 Known CisBP CTCCTGACTGGCAGCTGC Direct PWM Open · Scan
M08943_2.00 Known CisBP GGGATCCTCACTGGCAGCTGC Direct PWM Open · Scan
ZN563_HUMAN.H11MO.0.C Known HOCOMOCO GGGATCCTCACTGGCAGCTGC Direct PWM Open · Scan
Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M07733_2.00 NN 70+% CisBP TCTTTCTCTCTCTCC 81.5% identity Open · Scan
M07731_2.00 NN 70+% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 73.3% identity Open · Scan
M07659_2.00 NN 70+% CisBP GTCTTCCAAGTAGCTGGTGTT 70.9% identity Open · Scan
Nearest Neighbor (70% - 40%)35
MotifPredictionSourceDNA bindingSupportLogoActions
M00945_2.00 NN 70-40% CisBP CACCGCAC 59.7% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 58.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 56.6% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 55.9% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 55.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.9% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 53.9% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 53.7% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 53.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 52.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 52.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.3% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 52.3% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 51.4% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 51.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 50.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 50.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.3% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.3% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.2% identity Open · Scan
M00022_2.00 NN 70-40% CisBP GGCGCCACAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 476 aa
192-471

Region 192-471 0 PWM

Residues
280 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 192-4711 model
Actions
Predicted = Low TFS_Q8TA94:192:471_5wjq_D_1 5wjq 192-471 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-41PF01352KRAB boxNo overlap with loaded model regions
169-188PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
197-219PF00096Zinc finger, C2H2 typeoverlaps 192-471
225-247PF00096Zinc finger, C2H2 typeoverlaps 192-471
253-275PF00096Zinc finger, C2H2 typeoverlaps 192-471
281-303PF00096Zinc finger, C2H2 typeoverlaps 192-471
309-331PF00096Zinc finger, C2H2 typeoverlaps 192-471
337-359PF00096Zinc finger, C2H2 typeoverlaps 192-471
365-387PF00096Zinc finger, C2H2 typeoverlaps 192-471
421-443PF00096Zinc finger, C2H2 typeoverlaps 192-471