ModCRE DB

Transcription factor

Q8TBA2 - SIX2

SIX homeobox 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 291 aa

19 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1119.1 NN 70+% JASPAR AACTGAAACCTGATAC 99.6% identity Open · Scan
M00425_2.00 NN 70+% CisBP TGATACCC 96.9% identity Open · Scan
M06268_2.00 NN 70+% CisBP AATGATA 86.8% identity Open · Scan
MA1118.1 NN 70+% JASPAR GTAACCTGATA 74.3% identity Open · Scan
M04940_2.00 NN 70+% CisBP CCGTATCATT 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)14
MotifPredictionSourceDNA bindingSupportLogoActions
M00461_2.00 NN 70-40% CisBP ATGATACCC 69.3% identity Open · Scan
M00483_2.00 NN 70-40% CisBP GTGATAC 68.5% identity Open · Scan
M05159_2.00 NN 70-40% CisBP GATGATACGG 68.5% identity Open · Scan
M05357_2.00 NN 70-40% CisBP AATGATACGC 68.5% identity Open · Scan
MA0631.1 NN 70-40% JASPAR GATAGGGTATCACTAAT 68.5% identity Open · Scan
M02102_2.00 NN 70-40% CisBP ATGATACCCC 63.8% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 63.3% identity Open · Scan
M06526_2.00 NN 70-40% CisBP TGATA 63.2% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 61.6% identity Open · Scan
M02060_2.00 NN 70-40% CisBP TTTGACAGCA 59.0% identity Open · Scan
M02032_2.00 NN 70-40% CisBP TGACATGTCA 54.0% identity Open · Scan
M02064_2.00 NN 70-40% CisBP ATTACAAG 53.4% identity Open · Scan
M08574_2.00 NN 70-40% CisBP TTTGACAG 53.3% identity Open · Scan
M00276_2.00 NN 70-40% CisBP ACTAATTAATT 51.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 291 aa
131-178

Region 131-178 0 PWM

Residues
48 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
1B8I
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 131-1781 model
Actions
Predicted = Low DIMER_Q8TBA2:131:178_1b8i_B_1 1b8i 131-178 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
9-119PF16878Transcriptional regulator, SIX1, N-terminal SD domainNo overlap with loaded model regions
145-178PF05920Homeobox KN domainoverlaps 131-178