ModCRE DB

Transcription factor

Q8TBC5 - ZSCAN18

Zinc finger and SCAN domain-containing protein 18 (Zinc finger protein 447)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 510 aa

33 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)28
MotifPredictionSourceDNA bindingSupportLogoActions
MA0056.1 NN 70-40% JASPAR TGGGGA 62.2% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 61.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.8% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 58.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 56.6% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 56.1% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 56.0% identity Open · Scan
M04483_2.00 NN 70-40% CisBP ATGCACACACTGAAAAA 55.6% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 55.4% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 55.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.9% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.9% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 52.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 52.1% identity Open · Scan
M04530_2.00 NN 70-40% CisBP CCGTCCCCCTCCCCCC 51.9% identity Open · Scan
M00785_2.00 NN 70-40% CisBP TTCACTTCCT 51.8% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 51.4% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 51.0% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 51.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 50.8% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 50.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q8TBC5_ZSC18_HUMAN:411:463_1f2i_G_1 ModCRE Homology model TCCGGGGAGGA Region 411-463 · 1 3D model Open · Scan
TFS_sp_Q8TBC5_ZSC18_HUMAN:411:463_1f2i_H_1 ModCRE Homology model GTGACCCCCCA Region 411-463 · 1 3D model Open · Scan
TFS_sp_Q8TBC5_ZSC18_HUMAN:411:466_4gzn_C_1 ModCRE Homology model TTTTTTAAAC Region 411-466 · 1 3D model Open · Scan
TFS_sp_Q8TBC5_ZSC18_HUMAN:412:469_5yj3_C_1 ModCRE Homology model AAAGG Region 412-469 · 1 3D model Open · Scan
TFS_sp_Q8TBC5_ZSC18_HUMAN:412:469_5yj3_D_1 ModCRE Homology model CGGCCCCCCCCC Region 412-469 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 510 aa
411-469

Region 411-469 5 PWM

Residues
59 aa
Domains
No overlapping PFAM annotation recorded
3D models
11 active PDBs · 6 summary rows
Templates
1F2I, 1LLM, 2I13, 4GZN, 5EGB, 5EH2, 5EI9, 5YJ3, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 411-46911 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8TBC5_ZSC18_HUMAN:411:450_1llm_D_1 1llm 411-450 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:463_1f2i_G_1 1f2i 411-463 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:463_1f2i_H_1 1f2i 411-463 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:466_4gzn_C_1 4gzn 411-466 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_2i13_A_1 2i13 411-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5egb_A_1 5egb 411-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5eh2_F_1 5eh2 411-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5ei9_E_1 5ei9 411-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_6e93_A_1 6e93 411-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:412:469_5yj3_C_1 5yj3 412-469 View model · PDB
Predicted = Low TFS_sp_Q8TBC5_ZSC18_HUMAN:412:469_5yj3_D_1 5yj3 412-469 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 410:477 411 469 P:A · DNA:C,D 49.2% / 61.0% 39 View · PDB TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_2i13_A_1
1 5ei9 410:477 411 469 P:E · DNA:A,B 45.8% / 55.9% 53 View · PDB TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5ei9_E_1
2 5egb 410:477 411 469 P:A · DNA:C,D 45.8% / 55.9% 53 View · PDB TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5egb_A_1
3 5eh2 410:477 411 469 P:F · DNA:C,D 45.8% / 54.2% 54 View · PDB TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_5eh2_F_1
5 6e93 410:477 411 469 P:A · DNA:C,D 39.0% / 50.8% 52 View · PDB TFS_sp_Q8TBC5_ZSC18_HUMAN:411:469_6e93_A_1
1 1llm 410:477 411,411 450,450 P:C,D · DNA:A,B 37.5% / 50.0% 45,47 View · PDB DIMER_sp_Q8TBC5_ZSC18_HUMAN:411:450_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
46-133PF02023SCAN domainNo overlap with loaded model regions