ModCRE DB

Transcription factor

Q8TE12 - LMX1A

LIM homeobox transcription factor 1-alpha (LIM/homeobox protein 1.1) (LMX-1.1) (LIM/homeobox protein LMX1A)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 382 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0702.1 Known JASPAR TTAATTAA Direct PWM Open · Scan
MA0702.2 Known JASPAR TTAATTAA Direct PWM Open · Scan
MA0702.3 Known JASPAR TTAATTA Direct PWM Open · Scan
M03179_2.00 Known CisBP TTAATTAA Direct PWM Open · Scan
M05215_2.00 Known CisBP TTAATTAA Direct PWM Open · Scan
M05216_2.00 Known CisBP TTAACGAG Direct PWM Open · Scan
M05217_2.00 Known CisBP CTAATTAC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 382 aa
194-252

Region 194-252 0 PWM

Residues
59 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 194-2521 model
Actions
Predicted = Low DIMER_Q8TE12:194:252_1fjl_A_1 1fjl 194-252 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
35-90PF00412LIM domainNo overlap with loaded model regions
94-151PF00412LIM domainNo overlap with loaded model regions
196-252PF00046Homeodomainoverlaps 194-252