ModCRE DB

Transcription factor

Q8TF47 - ZFP90

Zinc finger protein 90 homolog (Zfp-90) (Zinc finger protein 756)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 636 aa

43 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known1
MotifPredictionSourceDNA bindingSupportLogoActions
M07672_2.00 Known CisBP CTTTAGCTGCAT Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 69.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 65.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 62.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 59.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 56.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 54.9% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 53.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.3% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 51.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 51.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 50.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 50.4% identity Open · Scan
MA0162.1 NN 70-40% JASPAR TGCGTGGGCGG 50.0% identity Open · Scan
MA0162.2 NN 70-40% JASPAR CCCCCGCCCCCGCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q8TF47_ZFP90_HUMAN:279:576_5wjq_D_1 ModCRE Homology model GGGGGCGGGGGGGCCACCGTGGGCCCCG Region 279-576 · 1 3D model Open · Scan
TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3j_E_1 ModCRE Homology model CGCCGGGGGGGGGAGGGGGCTGGGAA Region 337-632 · 1 3D model Open · Scan
TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3m_C_1 ModCRE Homology model CCGGGGGGGGGGGGCACAATGGAGGG Region 337-632 · 1 3D model Open · Scan
TFS_sp_Q8TF47_ZFP90_HUMAN:490:631_2i13_A_1 ModCRE Homology model ATTAGCAGCTAACTAATTTGT Region 490-631 · 1 3D model Open · Scan
TFS_sp_Q8TF47_ZFP90_HUMAN:522:632_5egb_A_1 ModCRE Homology model CCGGGGGCAGGGGGACCG Region 522-632 · 1 3D model Open · Scan
TFS_sp_Q8TF47_ZFP90_HUMAN:522:632_5ei9_E_1 ModCRE Homology model CCCCGGGGGGGCCGGCC Region 522-632 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 636 aa
279-632

Region 279-632 6 PWM

Residues
354 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
8 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 6 summary rows
Region 279-6328 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q8TF47_ZFP90_HUMAN:364:415_1llm_D_1 1llm 364-415 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:279:576_5wjq_D_1 5wjq 279-576 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:310:627_7w1m_H_1 7w1m 310-627 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3j_E_1 5v3j 337-632 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3m_C_1 5v3m 337-632 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:490:631_2i13_A_1 2i13 490-631 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:522:632_5egb_A_1 5egb 522-632 View model · PDB
Predicted = Low TFS_sp_Q8TF47_ZFP90_HUMAN:522:632_5ei9_E_1 5ei9 522-632 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 250:633 490 631 P:A · DNA:C,D 60.6% / 74.6% 92 View · PDB TFS_sp_Q8TF47_ZFP90_HUMAN:490:631_2i13_A_1
1 1llm 250:633 364,364 415,415 P:C,D · DNA:A,B 55.8% / 63.5% 59,61 View · PDB DIMER_sp_Q8TF47_ZFP90_HUMAN:364:415_1llm_D_1
3 5wjq 250:633 279 576 P:D · DNA:A,B 43.0% / 60.4% 99 View · PDB TFS_sp_Q8TF47_ZFP90_HUMAN:279:576_5wjq_D_1
1 5v3m 250:633 337 632 P:C · DNA:A,B 41.6% / 60.8% 100 View · PDB TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3m_C_1
2 5v3j 250:633 337 632 P:E · DNA:A,B 41.6% / 60.8% 100 View · PDB TFS_sp_Q8TF47_ZFP90_HUMAN:337:632_5v3j_E_1
5 7w1m 250:633 310 627 P:H · DNA:F,G 34.1% / 49.5% 94 View · PDB TFS_sp_Q8TF47_ZFP90_HUMAN:310:627_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-54PF01352KRAB boxNo overlap with loaded model regions
211-233PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
282-304PF00096Zinc finger, C2H2 typeoverlaps 279-632
310-332PF00096Zinc finger, C2H2 typeoverlaps 279-632
338-360PF00096Zinc finger, C2H2 typeoverlaps 279-632
366-388PF00096Zinc finger, C2H2 typeoverlaps 279-632
394-416PF00096Zinc finger, C2H2 typeoverlaps 279-632
450-472PF00096Zinc finger, C2H2 typeoverlaps 279-632
497-519PF00096Zinc finger, C2H2 typeoverlaps 279-632
525-547PF00096Zinc finger, C2H2 typeoverlaps 279-632
553-575PF00096Zinc finger, C2H2 typeoverlaps 279-632
581-603PF00096Zinc finger, C2H2 typeoverlaps 279-632
609-631PF00096Zinc finger, C2H2 typeoverlaps 279-632