ModCRE DB

Transcription factor

Q8WY36 - BBX

HMG box transcription factor BBX (Bobby sox homolog) (HMG box-containing protein 2)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 941 aa

8 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
M05763_2.00 Known CisBP TGAACGGCGTTCA Direct PWM Open · Scan
M05764_2.00 Known CisBP TGAACGTTGTTCA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q8WY36_BBX_HUMAN:79:151_1gt0_D_1 ModCRE Homology model TCTTTGTTGGGGTT Region 79-151 · 1 3D model Open · Scan
TFS_sp_Q8WY36_BBX_HUMAN:79:151_1o4x_B_1 ModCRE Homology model TTGCTTTTCCCGGTAA Region 79-151 · 1 3D model Open · Scan
TFS_sp_Q8WY36_BBX_HUMAN:79:151_4y60_C_1 ModCRE Homology model ATCTCATTTTTCCGG Region 79-151 · 1 3D model Open · Scan
TFS_sp_Q8WY36_BBX_HUMAN:79:151_6ht5_D_1 ModCRE Homology model TGTCTTTGTCCGGCAA Region 79-151 · 1 3D model Open · Scan
TFS_sp_Q8WY36_BBX_HUMAN:81:150_6jrp_A_1 ModCRE Homology model TTTTCATCAAC Region 81-150 · 1 3D model Open · Scan
TFS_sp_Q8WY36_BBX_HUMAN:81:150_7m5w_A_1 ModCRE Homology model AAGACTTCTTTAATTGGG Region 81-150 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 941 aa
79-151

Region 79-151 6 PWM

Residues
73 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
6 active PDBs · 5 summary rows
Templates
1GT0, 1O4X, 4Y60, 6HT5, 6JRP, 7M5W
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 5 summary rows
Region 79-1516 models · 5 summary rows
Actions
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:79:151_1gt0_D_1 1gt0 79-151 View model · PDB
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:79:151_1o4x_B_1 1o4x 79-151 View model · PDB
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:79:151_4y60_C_1 4y60 79-151 View model · PDB
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:79:151_6ht5_D_1 6ht5 79-151 View model · PDB
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:81:150_6jrp_A_1 6jrp 81-150 View model · PDB
Predicted = Low TFS_sp_Q8WY36_BBX_HUMAN:81:150_7m5w_A_1 7m5w 81-150 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6jrp 77:176 81 150 P:A · DNA:B,C 61.4% / 75.7% 94 View · PDB TFS_sp_Q8WY36_BBX_HUMAN:81:150_6jrp_A_1
2 7m5w 77:176 81 150 P:A · DNA:B,C 61.4% / 75.7% 50 View · PDB TFS_sp_Q8WY36_BBX_HUMAN:81:150_7m5w_A_1
3 1gt0 77:176 79 151 P:D · DNA:A,B 37.0% / 58.9% 92 View · PDB TFS_sp_Q8WY36_BBX_HUMAN:79:151_1gt0_D_1
4 6ht5 77:176 79 151 P:D · DNA:A,B 37.0% / 58.9% 94 View · PDB TFS_sp_Q8WY36_BBX_HUMAN:79:151_6ht5_D_1
5 1o4x 77:176 79 151 P:B · DNA:C,D 37.0% / 58.9% 94 View · PDB TFS_sp_Q8WY36_BBX_HUMAN:79:151_1o4x_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
81-148PF00505HMG (high mobility group) boxoverlaps 79-151
191-302PF09667Domain of unknown function (DUF2028)No overlap with loaded model regions