ModCRE DB

Transcription factor

Q92618 - ZNF516

Zinc finger protein 516

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1163 aa

40 Generated PWM 13 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)33
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 59.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 55.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.1% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 55.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 54.9% identity Open · Scan
M00613_2.00 NN 70-40% CisBP TTTTTTTC 54.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 53.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 53.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 53.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.0% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 52.9% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 52.1% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 52.1% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 52.1% identity Open · Scan
MA1491.1 NN 70-40% JASPAR AGACCACCCACGTCG 52.1% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 52.0% identity Open · Scan
MA0146.1 NN 70-40% JASPAR GGGGCCGAGGCCTG 52.0% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 51.6% identity Open · Scan
M04595_2.00 NN 70-40% CisBP GTTTCCGGTAAC 51.5% identity Open · Scan
M02667_2.00 NN 70-40% CisBP TATTATCTTATCTT 51.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.0% identity Open · Scan
MA0029.1 NN 70-40% JASPAR AAGATAAGATAACA 51.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M02643_2.00 NN 70-40% CisBP GACCACCCACG 50.0% identity Open · Scan
MA0735.1 NN 70-40% JASPAR AGACCCCCCACGAAGC 50.0% identity Open · Scan
MA0737.1 NN 70-40% JASPAR GACCCCCCACGAAG 50.0% identity Open · Scan
ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q92618_ZN516_HUMAN:241:298_1f2i_G_1 ModCRE Homology model GTGGGCGATTG Region 241-298 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:241:298_1f2i_H_1 ModCRE Homology model CGATATACCAC Region 241-298 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:241:301_4m9v_C_1 ModCRE Homology model TGTGCGCGTA Region 241-301 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:250:298_5yj3_C_1 ModCRE Homology model AAACC Region 250-298 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:36:84_3uk3_C_1 ModCRE Homology model AGAGAGAATCG Region 36-84 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:36:84_4is1_C_1 ModCRE Homology model TAAGGGATTCT Region 36-84 · 1 3D model Open · Scan
TFS_sp_Q92618_ZN516_HUMAN:36:84_4is1_D_1 ModCRE Homology model TGTTTGAGCC Region 36-84 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1163 aa
34-301

Region 34-301 7 PWM

Residues
268 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
13 active PDBs · 6 summary rows
Templates
1F2I, 1LLM, 3UK3, 4IS1, 4M9V, 5V3J, 5V3M, 5YJ3, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
13 active PDB models 6 summary rows
Region 34-30113 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q92618_ZN516_HUMAN:36:80_1llm_D_1 1llm 36-80 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:241:298_1f2i_G_1 1f2i 241-298 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:241:298_1f2i_H_1 1f2i 241-298 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:241:301_4m9v_C_1 4m9v 241-301 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:250:298_5yj3_C_1 5yj3 250-298 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:34:298_5v3j_E_1 5v3j 34-298 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:34:298_5v3m_C_1 5v3m 34-298 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:84_3uk3_C_1 3uk3 36-84 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:84_4is1_C_1 4is1 36-84 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:84_4is1_D_1 4is1 36-84 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:95_7w1m_H_1 7w1m 36-95 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:95_8ssq_A_1 8ssq 36-95 View model · PDB
Predicted = Low TFS_sp_Q92618_ZN516_HUMAN:36:95_8ssr_A_1 8ssr 36-95 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8ssr 24:99 36 95 P:A · DNA:B,C 38.3% / 55.0% 23 View · PDB TFS_sp_Q92618_ZN516_HUMAN:36:95_8ssr_A_1
2 8ssq 24:99 36 95 P:A · DNA:B,C 38.3% / 55.0% 23 View · PDB TFS_sp_Q92618_ZN516_HUMAN:36:95_8ssq_A_1
5 7w1m 24:99 36 95 P:H · DNA:F,G 38.3% / 55.0% 18 View · PDB TFS_sp_Q92618_ZN516_HUMAN:36:95_7w1m_H_1
1 1llm 24:99 36,36 80,80 P:C,D · DNA:A,B 37.8% / 55.6% 51,52 View · PDB DIMER_sp_Q92618_ZN516_HUMAN:36:80_1llm_D_1
3 5v3m 24:99 34 298 P:C · DNA:A,B 23.5% / 35.4% 94 View · PDB TFS_sp_Q92618_ZN516_HUMAN:34:298_5v3m_C_1
4 5v3j 24:99 34 298 P:E · DNA:A,B 23.5% / 35.4% 94 View · PDB TFS_sp_Q92618_ZN516_HUMAN:34:298_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-56PF00096Zinc finger, C2H2 typeoverlaps 34-301
62-84PF00096Zinc finger, C2H2 typeoverlaps 34-301
248-270PF00096Zinc finger, C2H2 typeoverlaps 34-301
278-298PF00096Zinc finger, C2H2 typeoverlaps 34-301
1098-1120PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions