Region 619-862 5 PWM
- Residues
- 244 aa
- Domains
- PF05236 · Transcription initiation factor TFIID component TAF4 family
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 6MZM, 7EDX, 7EGD, 7EGJ
- Sources
- Predicted = Low
Transcription factor
Q92750 - TAF4B
Transcription initiation factor TFIID subunit 4B (Transcription initiation factor TFIID 105 kDa subunit) (TAF(II)105) (TAFII-105) (TAFII105)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 862 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egd_D_1 | ModCRE | Homology model | GTCAGTGT | Region 619-862 · 1 3D model | Open · Scan | |
| TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egj_D_1 | ModCRE | Homology model | TTAGTTGT | Region 619-862 · 1 3D model | Open · Scan | |
| TFS_sp_Q92750_TAF4B_HUMAN:631:862_7egd_d_1 | ModCRE | Homology model | AAACTC | Region 631-862 · 1 3D model | Open · Scan | |
| TFS_sp_Q92750_TAF4B_HUMAN:652:789_6mzm_D_1 | ModCRE | Homology model | AGGAAGGATTAAAAAAAA | Region 652-789 · 1 3D model | Open · Scan | |
| TFS_sp_Q92750_TAF4B_HUMAN:654:862_7edx_D_1 | ModCRE | Homology model | CCCCCC | Region 654-862 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
862 aa
619-862
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 619-8625 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egd_D_1 | 7egd | 619-862 | View model · PDB |
| Predicted = Low | TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egj_D_1 | 7egj | 619-862 | View model · PDB |
| Predicted = Low | TFS_sp_Q92750_TAF4B_HUMAN:631:862_7egd_d_1 | 7egd | 631-862 | View model · PDB |
| Predicted = Low | TFS_sp_Q92750_TAF4B_HUMAN:652:789_6mzm_D_1 | 6mzm | 652-789 | View model · PDB |
| Predicted = Low | TFS_sp_Q92750_TAF4B_HUMAN:654:862_7edx_D_1 | 7edx | 654-862 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 4 | 6mzm | 589:862 | 652 | 789 | P:D · DNA:U,V | 56.5% / 73.2% | 100 | View · PDB TFS_sp_Q92750_TAF4B_HUMAN:652:789_6mzm_D_1 |
| 1 | 7egd | 589:862 | 619 | 862 | P:D · DNA:X,Y | 51.8% / 63.5% | 100 | View · PDB TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egd_D_1 |
| 2 | 7egj | 589:862 | 619 | 862 | P:D · DNA:X,Y | 51.4% / 63.1% | 100 | View · PDB TFS_sp_Q92750_TAF4B_HUMAN:619:862_7egj_D_1 |
| 3 | 7edx | 589:862 | 654 | 862 | P:D · DNA:X,Y | 48.1% / 60.3% | 99 | View · PDB TFS_sp_Q92750_TAF4B_HUMAN:654:862_7edx_D_1 |
| 5 | 7egd | 589:862 | 631 | 862 | P:d · DNA:X,Y | 38.8% / 49.4% | 100 | View · PDB TFS_sp_Q92750_TAF4B_HUMAN:631:862_7egd_d_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 258-348 | PF07531 | NHR1 homology to TAF | No overlap with loaded model regions |
| 616-857 | PF05236 | Transcription initiation factor TFIID component TAF4 family | overlaps 619-862 |