ModCRE DB

Transcription factor

Q92826 - HOXB13

Homeobox protein Hox-B13

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 284 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known17
MotifPredictionSourceDNA bindingSupportLogoActions
MA0901.1 Known JASPAR CCAATAAAAC Direct PWM Open · Scan
MA0901.2 Known JASPAR AACCAATAAAATTT Direct PWM Open · Scan
MA0901.3 Known JASPAR CCAATAAAA Direct PWM Open · Scan
MA1932.1 Known JASPAR ACCGGAAGTTGTAAAA Direct PWM Open · Scan
MA1932.2 Known JASPAR ACCGGAAGTTGTAAA Direct PWM Open · Scan
MA1937.1 Known JASPAR ACCGGAAGTCGTAAAA Direct PWM Open · Scan
MA1937.2 Known JASPAR CGGAAGTCGTAAA Direct PWM Open · Scan
MA1943.1 Known JASPAR ACCGGAAACATAAAC Direct PWM Open · Scan
MA1943.2 Known JASPAR CCGGAAACATAAA Direct PWM Open · Scan
M02092_2.00 Known CisBP TTTTATGGGC Direct PWM Open · Scan
M03175_2.00 Known CisBP GTTTTATTGG Direct PWM Open · Scan
M03176_2.00 Known CisBP GCTCGTAAAAA Direct PWM Open · Scan
M05201_2.00 Known CisBP GTTTTATTGGG Direct PWM Open · Scan
M05202_2.00 Known CisBP CCTCGTAAAAC Direct PWM Open · Scan
M05203_2.00 Known CisBP GCTCGTAAAAT Direct PWM Open · Scan
M09149_2.00 Known CisBP TTTTATTGGC Direct PWM Open · Scan
HXB13_HUMAN.H11MO.0.A Known HOCOMOCO TTTTATTGGC Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 284 aa
217-273

Region 217-273 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 217-2731 model
Actions
Predicted = Low DIMER_Q92826:217:273_5zjr_A_1 5zjr 217-273 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-123PF12284Hox protein A13 N terminalNo overlap with loaded model regions
217-273PF00046Homeodomainoverlaps 217-273