ModCRE DB

Transcription factor

Q92949 - FOXJ1

Forkhead box protein J1 (Forkhead-related protein FKHL13) (Hepatocyte nuclear factor 3 forkhead homolog 4) (HFH-4)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 421 aa

48 Generated PWM 16 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)38
MotifPredictionSourceDNA bindingSupportLogoActions
M03058_2.00 NN 70-40% CisBP GTAAACATAAACA 67.6% identity Open · Scan
M01987_2.00 NN 70-40% CisBP GTAAACAAA 65.3% identity Open · Scan
M10528_2.00 NN 70-40% CisBP ATAATAATATTTTT 65.3% identity Open · Scan
MA0614.1 NN 70-40% JASPAR GTAAACAA 65.3% identity Open · Scan
M03046_2.00 NN 70-40% CisBP GTAAACAA 61.2% identity Open · Scan
MA0851.1 NN 70-40% JASPAR AAAAAGTAAACAAACAC 61.2% identity Open · Scan
MA0852.1 NN 70-40% JASPAR AAAATGTAAACAAACAG 59.5% identity Open · Scan
MA1103.1 NN 70-40% JASPAR ATGTAAACAAG 59.5% identity Open · Scan
MA0852.2 NN 70-40% JASPAR AATGTAAACAAGGC 58.5% identity Open · Scan
M03034_2.00 NN 70-40% CisBP GTAAACA 57.5% identity Open · Scan
M01002_2.00 NN 70-40% CisBP TAAACAA 56.9% identity Open · Scan
M01990_2.00 NN 70-40% CisBP TTGTTTACA 56.0% identity Open · Scan
M03741_2.00 NN 70-40% CisBP TTATGTAAACAAT 55.6% identity Open · Scan
M09669_2.00 NN 70-40% CisBP ATGTAAACACACC 55.4% identity Open · Scan
M10565_2.00 NN 70-40% CisBP AAACAAACAATC 54.7% identity Open · Scan
MA0041.1 NN 70-40% JASPAR GAATGTTTGTTT 54.7% identity Open · Scan
M04827_2.00 NN 70-40% CisBP GTAATGTAAACAA 54.2% identity Open · Scan
M10570_2.00 NN 70-40% CisBP CTTAAGTAAACAATGG 54.0% identity Open · Scan
MA0031.1 NN 70-40% JASPAR GTAAACAT 54.0% identity Open · Scan
M01982_2.00 NN 70-40% CisBP TATGTAAACA 53.6% identity Open · Scan
MA0032.1 NN 70-40% JASPAR GGTAAGTA 53.6% identity Open · Scan
MA0846.1 NN 70-40% JASPAR TAAGTAAACAAA 53.6% identity Open · Scan
M00044_2.00 NN 70-40% CisBP GGTAAACAA 53.4% identity Open · Scan
M00045_2.00 NN 70-40% CisBP GTAAACAA 53.1% identity Open · Scan
M01974_2.00 NN 70-40% CisBP GTAAACAA 53.0% identity Open · Scan
M09104_2.00 NN 70-40% CisBP CCTTGTTTACTTT 53.0% identity Open · Scan
M00791_2.00 NN 70-40% CisBP ATGTAAACAA 52.1% identity Open · Scan
M03743_2.00 NN 70-40% CisBP TATGTAAATATTTACATA 52.1% identity Open · Scan
MA0613.1 NN 70-40% JASPAR GTAAACAA 52.1% identity Open · Scan
MA0847.1 NN 70-40% JASPAR GTAAACA 51.7% identity Open · Scan
M10571_2.00 NN 70-40% CisBP AAAAATAAATATAAGG 51.5% identity Open · Scan
MA0047.2 NN 70-40% JASPAR TGTTTACTTAGG 51.5% identity Open · Scan
MA0047.3 NN 70-40% JASPAR ATGTAAACATA 51.5% identity Open · Scan
M01016_2.00 NN 70-40% CisBP TGGACGCTAA 50.5% identity Open · Scan
MA0030.1 NN 70-40% JASPAR CAAACGTAAACAAT 50.5% identity Open · Scan
MA0047.1 NN 70-40% JASPAR CAATATTTACTT 50.5% identity Open · Scan
MA1606.1 NN 70-40% JASPAR ATGTAAACAAA 50.5% identity Open · Scan
MA0148.1 NN 70-40% JASPAR TGTTTACTTTG 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_F_1 ModCRE Homology model CTATGAAAAAAAATTTAAC Region 120-186 · 1 3D model Open · Scan
DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_K_1 ModCRE Homology model CTATTAAAAAAAAAAATTT Region 120-186 · 1 3D model Open · Scan
DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_3qrf_G_1 ModCRE Homology model AAAAATTTTTTCATAG Region 120-186 · 1 3D model Open · Scan
DIMER_sp_Q92949_FOXJ1_HUMAN:121:199_3g73_A_1 ModCRE Homology model ATTGTTTTTAAAAAACTTC Region 121-199 · 1 3D model Open · Scan
DIMER_sp_Q92949_FOXJ1_HUMAN:121:211_6ncm_A_1 ModCRE Homology model TATTTTATTTTTT Region 121-211 · 1 3D model Open · Scan
TFS_sp_Q92949_FOXJ1_HUMAN:120:214_2hdc_A_1 ModCRE Homology model TTTTGATAAAAAAAGCT Region 120-214 · 1 3D model Open · Scan
TFS_sp_Q92949_FOXJ1_HUMAN:121:213_2c6y_B_1 ModCRE Homology model TAGAAAAAAACA Region 121-213 · 1 3D model Open · Scan
TFS_sp_Q92949_FOXJ1_HUMAN:121:214_6ako_C_1 ModCRE Homology model TTTTGTTTTTTTTAAA Region 121-214 · 1 3D model Open · Scan
TFS_sp_Q92949_FOXJ1_HUMAN:121:214_6akp_C_1 ModCRE Homology model AAACAAGTTCTTA Region 121-214 · 1 3D model Open · Scan
TFS_sp_Q92949_FOXJ1_HUMAN:121:214_7cby_C_1 ModCRE Homology model TTTAAAAAAAACAAGA Region 121-214 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 421 aa
119-214

Region 119-214 10 PWM

Residues
96 aa
Domains
PF00250 · Forkhead domain
3D models
16 active PDBs · 10 summary rows
Templates
2A07, 2C6Y, 2HDC, 3G73, 3QRF, 6AKO, 6AKP, 6NCM, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
16 active PDB models 10 summary rows
Region 119-21416 models · 10 summary rows
Actions
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:119:199_7vox_C_1 7vox 119-199 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_F_1 2a07 120-186 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_J_1 2a07 120-186 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_K_1 2a07 120-186 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_3qrf_G_1 3qrf 120-186 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:120:213_6o3t_A_1 6o3t 120-213 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:121:199_3g73_A_1 3g73 121-199 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:121:211_6ncm_A_1 6ncm 121-211 View model · PDB
Predicted = Low DIMER_sp_Q92949_FOXJ1_HUMAN:121:214_2c6y_A_1 2c6y 121-214 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:120:213_6o3t_A_1 6o3t 120-213 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:120:214_2hdc_A_1 2hdc 120-214 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:121:213_2c6y_B_1 2c6y 121-213 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:121:214_2c6y_A_1 2c6y 121-214 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:121:214_6ako_C_1 6ako 121-214 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:121:214_6akp_C_1 6akp 121-214 View model · PDB
Predicted = Low TFS_sp_Q92949_FOXJ1_HUMAN:121:214_7cby_C_1 7cby 121-214 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2c6y 111:214 121,121 214,213 P:A,B · DNA:C,D 59.6% / 73.4% 95,97 View · PDB DIMER_sp_Q92949_FOXJ1_HUMAN:121:214_2c6y_A_1
1 2c6y 111:214 121,121 214,213 P:A,B · DNA:C,D 59.6% / 73.4% 95,97 View · PDB TFS_sp_Q92949_FOXJ1_HUMAN:121:214_2c6y_A_1
3 7vox 111:214 119,119 199,199 P:A,C · DNA:D,E 55.6% / 70.4% 95,95 View · PDB DIMER_sp_Q92949_FOXJ1_HUMAN:119:199_7vox_C_1
3 2hdc 111:214 120 214 P:A · DNA:B,C 54.7% / 70.5% 97 View · PDB TFS_sp_Q92949_FOXJ1_HUMAN:120:214_2hdc_A_1
2 6o3t 111:214 120,122 213,197 P:A,B · DNA:C,D 53.2% / 70.2% 98,100 View · PDB DIMER_sp_Q92949_FOXJ1_HUMAN:120:213_6o3t_A_1
2 6o3t 111:214 120,122 213,197 P:A,B · DNA:C,D 53.2% / 70.2% 98,100 View · PDB TFS_sp_Q92949_FOXJ1_HUMAN:120:213_6o3t_A_1
4 6ako 111:214 121 214 P:C · DNA:A,B 53.2% / 70.2% 96 View · PDB TFS_sp_Q92949_FOXJ1_HUMAN:121:214_6ako_C_1
5 7cby 111:214 121 214 P:C · DNA:A,B 52.1% / 68.1% 94 View · PDB TFS_sp_Q92949_FOXJ1_HUMAN:121:214_7cby_C_1
4 2a07 111:214 120,120 186,186 P:F,K · DNA:A,B 50.7% / 70.1% 81,80 View · PDB DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_F_1
5 2a07 111:214 120,120 186,186 P:J,K · DNA:A,B 50.7% / 70.1% 80,80 View · PDB DIMER_sp_Q92949_FOXJ1_HUMAN:120:186_2a07_J_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
121-204PF00250Forkhead domainoverlaps 119-214