ModCRE DB

Transcription factor

Q96C28 - ZNF707

Zinc finger protein 707

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 371 aa

24 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known2
MotifPredictionSourceDNA bindingSupportLogoActions
MA1715.1 Known JASPAR CCCCACTCCTGGTAC Direct PWM Open · Scan
M07661_2.00 Known CisBP ACCCCACTCCTGGTA Direct PWM Open · Scan
Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 55.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 51.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 51.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 50.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 50.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 50.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 50.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 50.0% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3j_E_1 ModCRE Homology model CCGGGGGCCCCCCCGGGGGCGTC Region 173-366 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3m_C_1 ModCRE Homology model CCCTTTGGTGGGCAGGGGGGGGCC Region 173-366 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:176:366_5wjq_D_1 ModCRE Homology model GGTGGTTGAAAGGGGGGGGTGACCCTT Region 176-366 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:191:338_2i13_A_1 ModCRE Homology model TCAGACCAACAGGCCTAAAAA Region 191-338 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:229:338_5egb_A_1 ModCRE Homology model CCCCCCCCTGGCCGACCC Region 229-338 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:229:338_5ei9_E_1 ModCRE Homology model CCCCCCGGGGGGGGCCC Region 229-338 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:231:338_5eh2_F_1 ModCRE Homology model TCCCCCTGGGGGGGGGCAC Region 231-338 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:232:311_2kmk_A_1 ModCRE Homology model TTGGGGGGAGCCGGGC Region 232-311 · 1 3D model Open · Scan
TFS_sp_Q96C28_ZN707_HUMAN:258:342_1g2f_C_1 ModCRE Homology model AAGGTGGAGGAGTGC Region 258-342 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 371 aa
173-366

Region 173-366 9 PWM

Residues
194 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
10 active PDBs · 6 summary rows
Templates
1G2F, 1LLM, 2I13, 2KMK, 5EGB, 5EH2, 5EI9, 5V3J, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 6 summary rows
Region 173-36610 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_Q96C28_ZN707_HUMAN:202:253_1llm_D_1 1llm 202-253 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3j_E_1 5v3j 173-366 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3m_C_1 5v3m 173-366 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:176:366_5wjq_D_1 5wjq 176-366 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:191:338_2i13_A_1 2i13 191-338 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:229:338_5egb_A_1 5egb 229-338 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:229:338_5ei9_E_1 5ei9 229-338 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:231:338_5eh2_F_1 5eh2 231-338 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:232:311_2kmk_A_1 2kmk 232-311 View model · PDB
Predicted = Low TFS_sp_Q96C28_ZN707_HUMAN:258:342_1g2f_C_1 1g2f 258-342 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 164:366 229 338 P:E · DNA:A,B 50.9% / 66.4% 99 View · PDB TFS_sp_Q96C28_ZN707_HUMAN:229:338_5ei9_E_1
4 2i13 164:366 191 338 P:A · DNA:C,D 48.0% / 66.9% 96 View · PDB TFS_sp_Q96C28_ZN707_HUMAN:191:338_2i13_A_1
1 5wjq 164:366 176 366 P:D · DNA:A,B 46.6% / 61.3% 67 View · PDB TFS_sp_Q96C28_ZN707_HUMAN:176:366_5wjq_D_1
2 5v3m 164:366 173 366 P:C · DNA:A,B 44.8% / 58.2% 70 View · PDB TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3m_C_1
3 5v3j 164:366 173 366 P:E · DNA:A,B 44.8% / 58.2% 70 View · PDB TFS_sp_Q96C28_ZN707_HUMAN:173:366_5v3j_E_1
1 1llm 164:366 202,202 253,253 P:C,D · DNA:A,B 38.5% / 57.7% 59,61 View · PDB DIMER_sp_Q96C28_ZN707_HUMAN:202:253_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
7-48PF01352KRAB boxNo overlap with loaded model regions
204-226PF00096Zinc finger, C2H2 typeoverlaps 173-366
260-282PF00096Zinc finger, C2H2 typeoverlaps 173-366
288-310PF00096Zinc finger, C2H2 typeoverlaps 173-366
316-338PF00096Zinc finger, C2H2 typeoverlaps 173-366
344-366PF00096Zinc finger, C2H2 typeoverlaps 173-366