ModCRE DB

Transcription factor

Q96CA4 - HOXD1

Homeobox protein Hox-D1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 328 aa

141 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M05100_2.00 NN 70+% CisBP TTAACGAC 99.6% identity Open · Scan
M00492_2.00 NN 70+% CisBP TAATTAGC 81.5% identity Open · Scan
M06261_2.00 NN 70+% CisBP TTAATTA 81.5% identity Open · Scan
M05057_2.00 NN 70+% CisBP TTAATTAC 75.8% identity Open · Scan
M00422_2.00 NN 70+% CisBP TTAATGA 72.2% identity Open · Scan
M00392_2.00 NN 70+% CisBP TTAATTAC 70.3% identity Open · Scan
MA1496.1 NN 70+% JASPAR GTCATTAG 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)134
MotifPredictionSourceDNA bindingSupportLogoActions
M04959_2.00 NN 70-40% CisBP GTAATTAC 69.7% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 69.7% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 69.7% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 68.5% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 68.5% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 68.5% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 68.5% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 68.5% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 68.5% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 68.5% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 67.2% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 66.6% identity Open · Scan
M06227_2.00 NN 70-40% CisBP TTAATTAT 66.6% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 65.5% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 65.4% identity Open · Scan
MA1504.1 NN 70-40% JASPAR GTCATTAA 64.9% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 64.8% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 64.8% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 64.8% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 64.8% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 64.8% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 64.8% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 64.8% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 64.8% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 64.8% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 64.8% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 64.8% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 64.8% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 63.7% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 63.7% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 63.7% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 63.6% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 63.6% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 63.3% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 62.9% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 62.9% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 62.9% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 62.9% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 62.0% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 62.0% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 62.0% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 62.0% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 61.1% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 61.1% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 61.1% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 61.1% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 61.1% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 60.3% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 60.3% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 60.3% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 60.3% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 60.3% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 60.3% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 60.3% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 60.3% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 60.3% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 60.3% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 59.7% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 59.3% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 59.2% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 59.2% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 59.2% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 59.2% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 59.2% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 59.2% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 58.1% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 57.8% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 57.4% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 57.4% identity Open · Scan
M06286_2.00 NN 70-40% CisBP CTTAAGTG 57.4% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 57.4% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 57.4% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 56.1% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 55.5% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 55.5% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 55.5% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 55.1% identity Open · Scan
M00464_2.00 NN 70-40% CisBP CTAATTACC 53.7% identity Open · Scan
M02107_2.00 NN 70-40% CisBP TTAATTGCT 53.7% identity Open · Scan
M03276_2.00 NN 70-40% CisBP GCTAATTAGC 53.7% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 53.7% identity Open · Scan
M06238_2.00 NN 70-40% CisBP TCTTAATTAG 53.7% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 53.7% identity Open · Scan
MA0642.1 NN 70-40% JASPAR CCCAATTAGC 53.7% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 53.7% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 53.7% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 53.7% identity Open · Scan
M06323_2.00 NN 70-40% CisBP ATTAATTG 53.5% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 52.7% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 52.7% identity Open · Scan
M00457_2.00 NN 70-40% CisBP TTAATTGCT 51.8% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 51.8% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 51.8% identity Open · Scan
M03777_2.00 NN 70-40% CisBP GTAATTGC 51.8% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 51.8% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 51.8% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 51.8% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 51.8% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 51.8% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 51.8% identity Open · Scan
MA0618.1 NN 70-40% JASPAR TTAATTAG 51.8% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 51.8% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 51.8% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 51.8% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 51.8% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 51.8% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 51.8% identity Open · Scan
MA1471.1 NN 70-40% JASPAR AAAAACCATTAC 51.8% identity Open · Scan
M02170_2.00 NN 70-40% CisBP TTAATTAG 51.7% identity Open · Scan
M02181_2.00 NN 70-40% CisBP TTAAGTGGT 51.7% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 51.6% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 50.9% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 50.9% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 50.8% identity Open · Scan
M02165_2.00 NN 70-40% CisBP CTTAATTGG 50.8% identity Open · Scan
M03152_2.00 NN 70-40% CisBP TAATTAGCTAATTA 50.8% identity Open · Scan
M09676_2.00 NN 70-40% CisBP TTAATGA 50.8% identity Open · Scan
MA0612.1 NN 70-40% JASPAR CCTAATTACC 50.8% identity Open · Scan
MA0886.1 NN 70-40% JASPAR GCTAATTAGC 50.8% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 50.6% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 50.5% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 50.0% identity Open · Scan
M06290_2.00 NN 70-40% CisBP TTTAATTA 50.0% identity Open · Scan
M06339_2.00 NN 70-40% CisBP TTTAATTGG 50.0% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 50.0% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 50.0% identity Open · Scan
M06554_2.00 NN 70-40% CisBP TTAATTG 50.0% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 50.0% identity Open · Scan
MA0119.1 NN 70-40% JASPAR TGGCACCATGCCAA 50.0% identity Open · Scan
MA0635.1 NN 70-40% JASPAR GCTAAACGGT 50.0% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 50.0% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 50.0% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 328 aa
204-290

Region 204-290 0 PWM

Residues
87 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1B72
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 204-2901 model
Actions
Predicted = Low DIMER_Q96CA4:204:290_1b72_A_1 1b72 204-290 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
233-286PF00046Homeodomainoverlaps 204-290